Variant report

Variant	rs3733043
Chromosome Location	chr3:52734488-52734489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:52733568-52735088	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr3:52733659-52734589	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52733044..52735275-chr3:52738797..52740602,3	MCF-7	breast:

Variant related genes	Relation type
SPCS1	TF binding region
GLT8D1	TF binding region
ENSG00000016864	Chromatin interaction
ENSG00000114902	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2710317	1.00[JPT][hapmap]
rs4687545	1.00[JPT][hapmap]
rs758801	1.00[JPT][hapmap]
rs7614424	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52721000-52738600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:52721400-52734600	Strong transcription	Primary T cells from cord blood	blood
3	chr3:52721400-52735800	Strong transcription	Fetal Muscle Leg	muscle
4	chr3:52722000-52734600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:52722600-52736600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:52727600-52735800	Strong transcription	Osteobl	bone
7	chr3:52728400-52737600	Weak transcription	Stomach Mucosa	stomach
8	chr3:52728800-52736400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:52729000-52738600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:52729400-52738000	Weak transcription	Small Intestine	intestine
11	chr3:52730000-52737600	Weak transcription	Fetal Heart	heart
12	chr3:52730000-52738800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr3:52730400-52738400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:52730400-52738600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:52730600-52736400	Weak transcription	Pancreas	Pancrea
16	chr3:52730600-52737400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:52730600-52738600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:52730600-52738600	Weak transcription	Esophagus	oesophagus
19	chr3:52731600-52738600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:52731800-52735200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:52731800-52737800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr3:52732000-52736200	Weak transcription	Ovary	ovary
23	chr3:52732000-52737600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:52732000-52737600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:52732000-52737600	Weak transcription	A549	lung
26	chr3:52732000-52737600	Weak transcription	Hela-S3	cervix
27	chr3:52732000-52737600	Weak transcription	K562	blood
28	chr3:52732000-52737800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:52732000-52737800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr3:52732000-52737800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr3:52732000-52737800	Weak transcription	Colonic Mucosa	Colon
32	chr3:52732000-52737800	Weak transcription	Spleen	Spleen
33	chr3:52732000-52737800	Weak transcription	NHEK	skin
34	chr3:52732000-52737800	Weak transcription	NHLF	lung
35	chr3:52732000-52738000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:52732000-52738000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr3:52732000-52738400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr3:52732000-52738400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr3:52732000-52738400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:52732000-52738600	Weak transcription	Aorta	Aorta
41	chr3:52732000-52738600	Weak transcription	Gastric	stomach
42	chr3:52732000-52738600	Weak transcription	Right Ventricle	heart
43	chr3:52732200-52736400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:52732200-52737600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr3:52732200-52737600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr3:52732200-52737600	Weak transcription	HSMMtube	muscle
47	chr3:52732200-52737800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:52732200-52737800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:52732200-52737800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr3:52732200-52737800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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