Variant report

Variant	rs373313452
Chromosome Location	chr13:97991443-97991444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97887496..97890340-chr13:97991017..97992548,2	K562	blood:
2	chr13:97985220..97987596-chr13:97990645..97993198,3	K562	blood:
3	chr13:97990074..97993792-chr13:97995202..97997609,3	K562	blood:
4	chr13:97907616..97910279-chr13:97990865..97992598,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3398856	chr13:97990623-97992426	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3521630	chr13:97991380-97991465	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3521641	chr13:97991380-97991465	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3341598	chr13:97991394-97991460	Flanking Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
2	chr13:97971800-97991800	Weak transcription	Small Intestine	intestine
3	chr13:97980800-97991800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:97981000-97998800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:97982000-98002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:97982000-98009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr13:97984000-98000800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr13:97984400-97992400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr13:97985600-97992800	Strong transcription	HepG2	liver
11	chr13:97985800-97992000	Strong transcription	Primary B cells from cord blood	blood
12	chr13:97986200-97991600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr13:97986200-98003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr13:97986400-97992000	Strong transcription	Primary T cells from cord blood	blood
15	chr13:97986400-97992400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr13:97986600-97991600	Strong transcription	Primary B cells from peripheral blood	blood
17	chr13:97986600-97998400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr13:97987600-97991600	Strong transcription	Fetal Intestine Small	intestine
19	chr13:97988000-97992200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:97988200-97992200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr13:97988800-97991600	Strong transcription	Primary hematopoietic stem cells	blood
22	chr13:97988800-97991600	Strong transcription	HUVEC	blood vessel
23	chr13:97989200-97999000	Weak transcription	Colonic Mucosa	Colon
24	chr13:97989400-97991600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr13:97989400-97993200	Genic enhancers	Liver	Liver
26	chr13:97989400-97996600	Weak transcription	Fetal Thymus	thymus
27	chr13:97989400-97999200	Weak transcription	NH-A	brain
28	chr13:97989600-97998600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr13:97989600-97999400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr13:97989800-97995200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr13:97990000-97993000	Weak transcription	Hela-S3	cervix
32	chr13:97990000-97995600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr13:97990000-97998600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr13:97990400-97991600	Genic enhancers	Spleen	Spleen
35	chr13:97990400-97992000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr13:97990400-97992000	Genic enhancers	Pancreas	Pancrea
37	chr13:97990400-97992000	Enhancers	Psoas Muscle	Psoas
38	chr13:97990400-97992400	Genic enhancers	Lung	lung
39	chr13:97990400-97992600	Enhancers	Right Atrium	heart
40	chr13:97990600-97994600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr13:97990800-97991600	Flanking Active TSS	Brain Anterior Caudate	brain
42	chr13:97990800-97991600	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr13:97990800-97991800	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr13:97990800-97991800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr13:97990800-97992000	Genic enhancers	Fetal Stomach	stomach
46	chr13:97990800-97992200	Enhancers	Aorta	Aorta
47	chr13:97990800-97992600	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr13:97991000-97991600	Flanking Active TSS	Brain Angular Gyrus	brain
49	chr13:97991000-97991600	Transcr. at gene 5' and 3'	Fetal Lung	lung
50	chr13:97991000-97991800	Genic enhancers	Esophagus	oesophagus

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