Variant report

Variant	rs3733314
Chromosome Location	chr4:22390558-22390559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21790239..21792742-chr4:22389960..22391772,13	MCF-7	breast:
2	chr4:21790330..21793132-chr4:22390550..22391689,10	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1500464	1.00[ASN][1000 genomes]
rs16872501	1.00[AFR][1000 genomes]
rs16872551	1.00[AFR][1000 genomes]
rs16872594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28523424	0.94[AMR][1000 genomes]
rs28631312	0.94[AMR][1000 genomes]
rs28758596	0.94[AMR][1000 genomes]
rs3814416	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4697313	1.00[AFR][1000 genomes]
rs61792020	0.81[AMR][1000 genomes]
rs61792024	0.81[AMR][1000 genomes]
rs61792025	0.81[AMR][1000 genomes]
rs61792026	0.81[AMR][1000 genomes]
rs9654097	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv428756	chr4:22239826-22406106	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22368800-22418600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:22371600-22449800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:22372000-22400400	Weak transcription	Gastric	stomach
4	chr4:22382600-22409600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:22383200-22438000	Weak transcription	Lung	lung
6	chr4:22383600-22404200	Weak transcription	Fetal Kidney	kidney
7	chr4:22383600-22442800	Weak transcription	A549	lung
8	chr4:22384200-22400400	Weak transcription	Ovary	ovary
9	chr4:22384200-22401000	Weak transcription	Small Intestine	intestine
10	chr4:22384200-22413000	Weak transcription	Fetal Heart	heart
11	chr4:22384600-22390800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:22384600-22392000	Weak transcription	Stomach Mucosa	stomach
13	chr4:22384600-22392400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:22384600-22393000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:22385200-22391000	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:22385200-22391400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr4:22385200-22391600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:22385400-22430400	Weak transcription	Psoas Muscle	Psoas
19	chr4:22386000-22446600	Weak transcription	Fetal Thymus	thymus
20	chr4:22386600-22394400	Strong transcription	Liver	Liver
21	chr4:22386600-22394600	Strong transcription	Fetal Intestine Large	intestine
22	chr4:22386800-22390600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:22386800-22390800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr4:22387200-22390600	Strong transcription	Primary T cells from cord blood	blood
25	chr4:22387200-22391000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:22387400-22397800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:22387600-22390800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:22387600-22390800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:22387600-22390800	Strong transcription	Fetal Lung	lung
30	chr4:22387600-22392200	Strong transcription	Fetal Muscle Leg	muscle
31	chr4:22387800-22390800	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr4:22387800-22392800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:22387800-22397800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:22388000-22391000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:22388000-22393000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:22388000-22393000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:22388000-22399200	Weak transcription	Fetal Brain Female	brain
38	chr4:22388000-22411400	Weak transcription	NHDF-Ad	bronchial
39	chr4:22388000-22416600	Weak transcription	NHLF	lung
40	chr4:22388200-22391400	Strong transcription	Fetal Muscle Trunk	muscle
41	chr4:22388200-22391400	Strong transcription	HSMMtube	muscle
42	chr4:22388200-22393000	Weak transcription	Osteobl	bone
43	chr4:22388200-22393200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:22388200-22432400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:22388200-22442800	Weak transcription	Brain Germinal Matrix	brain
46	chr4:22388400-22391000	Strong transcription	NHEK	skin
47	chr4:22388400-22417800	Weak transcription	HUVEC	blood vessel
48	chr4:22388400-22473600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr4:22388600-22390600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:22388600-22390600	Strong transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links