Variant report
| Variant | rs373350868 |
|---|---|
| Chromosome Location | chr3:22941953-22941954 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr3:22941835-22942063 | MCF10A-Er-Src | breast: | n/a | n/a |
| 2 | FOS | chr3:22941835-22942166 | MCF10A-Er-Src | breast: | n/a | n/a |
| 3 | FOS | chr3:22941867-22942163 | MCF10A-Er-Src | breast: | n/a | n/a |
| 4 | FOS | chr3:22941832-22942166 | MCF10A-Er-Src | breast: | n/a | n/a |
| 5 | FAM48A | chr3:22941819-22942009 | GM12878 | blood: | n/a | n/a |
| 6 | CEBPB | chr3:22941868-22942133 | HepG2 | liver: | n/a | chr3:22942020-22942031 |
| 7 | STAT3 | chr3:22941845-22942094 | MCF10A-Er-Src | breast: | n/a | n/a |
| 8 | WRNIP1 | chr3:22941945-22942058 | GM12878 | blood: | n/a | n/a |
| 9 | FOS | chr3:22941822-22942149 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:22937203..22939842-chr3:22940484..22942154,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RANP7 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014828 | chr3:22554271-23033498 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1008306 | chr3:22762892-23026548 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv16397 | chr3:22941523-22946888 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
