Variant report

Variant	rs373353644
Chromosome Location	chr10:99338386-99338387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99338261..99340049-chr10:99343345..99345050,2	K562	blood:

Variant related genes	Relation type
ENSG00000249967	Chromatin interaction
ENSG00000241935	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv818782	chr10:99337572-99350128	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv971896	chr10:99338341-99349551	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99334800-99343400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:99335000-99343400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:99335200-99343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:99335400-99340200	Weak transcription	Pancreas	Pancrea
5	chr10:99336000-99342000	Weak transcription	Right Ventricle	heart
6	chr10:99336000-99348800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:99336200-99339800	Weak transcription	Hela-S3	cervix
8	chr10:99336200-99340200	Weak transcription	Placenta	Placenta
9	chr10:99336200-99340800	Weak transcription	Right Atrium	heart
10	chr10:99336200-99342000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:99336200-99343400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:99336200-99343400	Weak transcription	Psoas Muscle	Psoas
13	chr10:99337200-99338600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:99337400-99338800	Strong transcription	Left Ventricle	heart
15	chr10:99337800-99340000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:99337800-99343000	Weak transcription	A549	lung
17	chr10:99338000-99338400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:99338000-99338400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:99338000-99338400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:99338000-99338400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:99338000-99338400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:99338000-99338400	Active TSS	Brain Germinal Matrix	brain
23	chr10:99338000-99338400	Bivalent/Poised TSS	Fetal Brain Female	brain
24	chr10:99338000-99338400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
25	chr10:99338000-99338400	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr10:99338000-99338400	Bivalent Enhancer	Fetal Stomach	stomach
27	chr10:99338000-99338600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:99338200-99338400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
29	chr10:99338200-99338400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr10:99338200-99338400	Active TSS	Fetal Muscle Leg	muscle
31	chr10:99338200-99338400	Enhancers	Lung	lung
32	chr10:99338200-99338600	Enhancers	Primary hematopoietic stem cells	blood
33	chr10:99338200-99338600	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr10:99338200-99338600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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