Variant report

Variant	rs3733748
Chromosome Location	chr5:17275552-17275553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12655898	1.00[EUR][1000 genomes]
rs6899153	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv830218	chr5:17093162-17290045	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17232800-17278800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:17256200-17279800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:17259000-17275800	Weak transcription	HMEC	breast
4	chr5:17259000-17276000	Weak transcription	HSMM	muscle
5	chr5:17259200-17275800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:17261800-17276000	Weak transcription	Fetal Lung	lung
7	chr5:17262000-17276200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:17262600-17277800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:17264800-17276000	Weak transcription	NHDF-Ad	bronchial
10	chr5:17265800-17276000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:17266200-17279200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:17268000-17276600	Weak transcription	Gastric	stomach
13	chr5:17269800-17280800	Weak transcription	Fetal Kidney	kidney
14	chr5:17273000-17278000	Strong transcription	Hela-S3	cervix
15	chr5:17273600-17278200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr5:17273800-17277200	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:17273800-17278200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:17273800-17278200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:17274000-17276000	Weak transcription	Primary B cells from cord blood	blood
20	chr5:17274000-17276000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:17274200-17276000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:17274200-17277400	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:17274200-17277800	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr5:17274200-17278200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr5:17274200-17278600	Weak transcription	Liver	Liver
26	chr5:17274200-17279000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr5:17274400-17276800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr5:17274400-17277000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:17274400-17277000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr5:17274400-17277800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr5:17274400-17277800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:17274400-17278000	Strong transcription	NHEK	skin
33	chr5:17274400-17279200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:17274400-17279400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:17274400-17279400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr5:17274400-17280000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:17274600-17276000	Strong transcription	Primary B cells from peripheral blood	blood
38	chr5:17274600-17276400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:17274600-17276600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:17274600-17276600	Strong transcription	Fetal Muscle Leg	muscle
41	chr5:17274600-17276600	Strong transcription	Ovary	ovary
42	chr5:17274600-17276600	Strong transcription	HSMMtube	muscle
43	chr5:17274600-17277000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:17274600-17277000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr5:17274600-17277600	Strong transcription	Fetal Stomach	stomach
46	chr5:17274600-17277800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr5:17274600-17277800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr5:17274600-17278000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr5:17274600-17278000	Strong transcription	Brain Germinal Matrix	brain
50	chr5:17274600-17279600	Strong transcription	NHLF	lung

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