Variant report

Variant	rs373385341
Chromosome Location	chr6:24359067-24359068
allele	-/ATA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24281775..24284260-chr6:24359000..24360636,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3426241	chr6:24358398-24360946	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3336385	chr6:24358423-24360671	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24357400-24359800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:24358200-24360000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:24358400-24359800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:24358400-24359800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:24358400-24359800	Weak transcription	Right Atrium	heart
6	chr6:24358400-24360000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:24358400-24360000	Weak transcription	Aorta	Aorta
8	chr6:24358400-24360000	Weak transcription	Left Ventricle	heart
9	chr6:24358600-24359800	Weak transcription	Brain Angular Gyrus	brain
10	chr6:24358600-24359800	Weak transcription	Brain Anterior Caudate	brain
11	chr6:24358600-24359800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:24358600-24359800	Weak transcription	Psoas Muscle	Psoas
13	chr6:24358600-24359800	Weak transcription	GM12878-XiMat	blood
14	chr6:24358600-24359800	Weak transcription	HMEC	breast
15	chr6:24358600-24360000	Weak transcription	Adipose Nuclei	Adipose
16	chr6:24358600-24360000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:24358600-24360000	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:24358600-24360200	Weak transcription	Lung	lung
19	chr6:24358800-24359400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:24358800-24359800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:24358800-24359800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:24358800-24359800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:24358800-24359800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:24358800-24359800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr6:24358800-24359800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:24358800-24359800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:24358800-24359800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:24358800-24359800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:24358800-24359800	Weak transcription	Liver	Liver
30	chr6:24358800-24359800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:24358800-24359800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:24358800-24359800	Weak transcription	Fetal Intestine Small	intestine
33	chr6:24358800-24359800	Weak transcription	Fetal Kidney	kidney
34	chr6:24358800-24359800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:24358800-24359800	Weak transcription	Gastric	stomach
36	chr6:24358800-24359800	Weak transcription	Ovary	ovary
37	chr6:24358800-24359800	Weak transcription	Pancreas	Pancrea
38	chr6:24358800-24359800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:24358800-24359800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:24358800-24359800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:24358800-24359800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:24358800-24359800	Weak transcription	Spleen	Spleen
43	chr6:24358800-24359800	Weak transcription	A549	lung
44	chr6:24358800-24360000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:24358800-24360000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:24358800-24360000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:24358800-24360000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:24358800-24360000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:24358800-24360000	Weak transcription	Colonic Mucosa	Colon
50	chr6:24358800-24360000	Weak transcription	Duodenum Mucosa	Duodenum

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