Variant report

Variant	rs373397338
Chromosome Location	chr11:66899911-66899912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66894856..66897785-chr11:66899004..66901222,2	K562	blood:
2	chr11:66896524..66901223-chr11:66901384..66904536,5	K562	blood:
3	chr11:66884732..66891772-chr11:66894798..66900811,8	K562	blood:
4	chr11:66899050..66903329-chr11:66906859..66910351,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv3433546	chr11:66899910-66900665	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66888800-66902200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:66888800-66907400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:66889000-66900000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:66889000-66901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:66889000-66920400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:66889200-66901600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:66889800-66900000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:66889800-66901400	Weak transcription	A549	lung
10	chr11:66889800-66902000	Weak transcription	HUVEC	blood vessel
11	chr11:66889800-66902200	Weak transcription	Aorta	Aorta
12	chr11:66889800-66902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:66889800-66903800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:66890000-66901400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:66890000-66901600	Weak transcription	HSMMtube	muscle
17	chr11:66890000-66908400	Strong transcription	Fetal Stomach	stomach
18	chr11:66890000-66912800	Weak transcription	Psoas Muscle	Psoas
19	chr11:66890200-66920000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:66890400-66909400	Strong transcription	Fetal Muscle Trunk	muscle
21	chr11:66890800-66900200	Weak transcription	Fetal Brain Male	brain
22	chr11:66890800-66912600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
24	chr11:66891200-66900200	Weak transcription	Brain Angular Gyrus	brain
25	chr11:66891200-66901400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:66891400-66900000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr11:66891400-66901200	Weak transcription	Pancreas	Pancrea
28	chr11:66891400-66903200	Weak transcription	Fetal Heart	heart
29	chr11:66891400-66908800	Strong transcription	Fetal Muscle Leg	muscle
30	chr11:66892200-66908600	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:66892400-66904400	Strong transcription	Thymus	Thymus
32	chr11:66892600-66914000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:66892800-66911800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:66892800-66912600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:66892800-66913000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:66893200-66923000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr11:66893200-66923400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr11:66893400-66906400	Strong transcription	Osteobl	bone
39	chr11:66893800-66907400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:66894000-66909000	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:66894200-66911400	Strong transcription	Adipose Nuclei	Adipose
42	chr11:66894400-66922400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:66894600-66909800	Strong transcription	GM12878-XiMat	blood
44	chr11:66894800-66900200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:66895000-66903600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:66895000-66909600	Strong transcription	Dnd41	blood
47	chr11:66895200-66915800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:66895600-66911000	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr11:66895600-66922000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:66895800-66904400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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