Variant report

Variant	rs3734107
Chromosome Location	chr5:35921266-35921267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35918022..35920429-chr5:35920583..35922848,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1008756	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1010599	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1010601	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1025039	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10491434	1.00[JPT][hapmap]
rs1053496	1.00[JPT][hapmap]
rs11567699	1.00[JPT][hapmap]
rs11567701	1.00[JPT][hapmap]
rs11567751	1.00[JPT][hapmap]
rs11950831	1.00[ASN][1000 genomes]
rs11955657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345827	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1382347	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1494554	1.00[JPT][hapmap]
rs1494571	1.00[JPT][hapmap]
rs17376481	0.94[ASW][hapmap];0.88[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1833907	1.00[JPT][hapmap]
rs2098706	1.00[CHB][hapmap]
rs2194224	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2289878	1.00[CHB][hapmap]
rs2361403	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3194051	1.00[JPT][hapmap]
rs3822733	1.00[JPT][hapmap]
rs3866449	0.87[ASN][1000 genomes]
rs4024109	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4024110	0.94[ASN][1000 genomes]
rs59030624	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6862692	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6868693	1.00[CHB][hapmap]
rs6871116	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6873195	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6878577	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6878688	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6890590	1.00[CHB][hapmap]
rs700179	1.00[JPT][hapmap]
rs72742471	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7702587	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7702828	0.83[ASN][1000 genomes]
rs7716969	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7719334	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7723452	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs852242	0.84[CEU][hapmap]
rs9765078	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs984164	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs987107	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv4794	chr5:35906690-35934205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35915600-35924200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:35919600-35924200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr5:35919800-35921400	ZNF genes & repeats	Fetal Thymus	thymus
4	chr5:35920000-35923400	Weak transcription	Osteobl	bone
5	chr5:35920000-35924000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:35920000-35924200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:35920000-35924600	Weak transcription	HSMMtube	muscle
8	chr5:35920200-35923400	Weak transcription	NHDF-Ad	bronchial
9	chr5:35920200-35923600	Weak transcription	HMEC	breast
10	chr5:35920200-35924000	Weak transcription	Hela-S3	cervix
11	chr5:35920400-35923200	Weak transcription	NHLF	lung
12	chr5:35920400-35924000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:35920400-35924200	Weak transcription	NHEK	skin
14	chr5:35920600-35924200	Enhancers	Dnd41	blood
15	chr5:35920600-35924400	Enhancers	Thymus	Thymus
16	chr5:35920800-35923600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:35920800-35924200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:35920800-35924400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:35921000-35922800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:35921000-35924200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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