Variant report

Variant	rs3734186
Chromosome Location	chr6:131157685-131157686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP3-324N14.2.1-1	chr6:131156010-131158273	ENSG00000256162

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10434884	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12195366	0.82[CHB][hapmap]
rs12196734	0.82[CHB][hapmap]
rs12210303	0.93[ASN][1000 genomes]
rs1582056	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28431013	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3777434	0.82[CHD][hapmap]
rs3777435	0.83[CHD][hapmap]
rs3777436	0.82[CHD][hapmap]
rs61228196	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6569708	0.84[CHD][hapmap]
rs6927264	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73631048	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7775013	0.82[CHD][hapmap]
rs9372981	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9375774	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9375775	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9375776	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9375790	0.82[CHB][hapmap]
rs9385562	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9385563	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9388851	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9388852	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9388855	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402284	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9402285	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9402287	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402291	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954919	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131132000-131159200	Weak transcription	HSMM	muscle
2	chr6:131132000-131173800	Weak transcription	HSMMtube	muscle
3	chr6:131136400-131174400	Weak transcription	Left Ventricle	heart
4	chr6:131147600-131157800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:131148800-131158000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:131149000-131172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
8	chr6:131149600-131160400	Weak transcription	Fetal Brain Male	brain
9	chr6:131150400-131161400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:131150600-131183400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:131151600-131158200	Genic enhancers	HepG2	liver
12	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:131152400-131159400	Weak transcription	Adipose Nuclei	Adipose
14	chr6:131152400-131161800	Strong transcription	Fetal Intestine Large	intestine
15	chr6:131152800-131168000	Weak transcription	Fetal Kidney	kidney
16	chr6:131153400-131159600	Weak transcription	Fetal Stomach	stomach
17	chr6:131153600-131162400	Weak transcription	Fetal Lung	lung
18	chr6:131154000-131173800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:131154600-131160800	Weak transcription	Fetal Intestine Small	intestine
20	chr6:131155000-131160200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:131155000-131174600	Weak transcription	Aorta	Aorta
22	chr6:131156000-131158200	Enhancers	Brain Hippocampus Middle	brain
23	chr6:131156200-131159800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:131156200-131161000	Genic enhancers	Liver	Liver
25	chr6:131156600-131158200	Enhancers	Brain Angular Gyrus	brain
26	chr6:131156600-131158200	Enhancers	Brain Substantia Nigra	brain
27	chr6:131156600-131158600	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr6:131157200-131157800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:131157200-131158000	Enhancers	Colon Smooth Muscle	Colon
30	chr6:131157200-131159600	Weak transcription	NHLF	lung
31	chr6:131157400-131158000	Enhancers	Brain Anterior Caudate	brain
32	chr6:131157400-131160000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:131157600-131157800	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr6:131157600-131158000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:131157600-131158200	Enhancers	Fetal Muscle Leg	muscle
36	chr6:131157600-131159600	Weak transcription	Dnd41	blood
37	chr6:131157600-131170200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links