Variant report

Variant	rs3734273
Chromosome Location	chr6:11714806-11714807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11707605..11709932-chr6:11714222..11716200,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12198491	0.87[YRI][hapmap]
rs1413344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs169791	0.83[CHB][hapmap]
rs172405	0.83[CHD][hapmap]
rs1812241	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2013368	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs210892	0.83[CHB][hapmap];0.81[CHD][hapmap]
rs210901	0.82[CEU][hapmap];0.81[MKK][hapmap];0.94[YRI][hapmap]
rs210904	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs210924	0.83[CHB][hapmap]
rs210930	0.83[CHB][hapmap]
rs2235402	0.83[CHB][hapmap]
rs2235403	0.83[CHB][hapmap]
rs2235409	0.83[CHB][hapmap]
rs2235413	0.88[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2235420	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2254655	0.83[CHB][hapmap]
rs2254668	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs2294423	0.83[CHB][hapmap]
rs2294424	0.83[CHB][hapmap];0.81[CHD][hapmap]
rs6911562	0.88[YRI][hapmap]
rs6933892	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6934084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72819641	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs926364	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs932343	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs932344	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.80[MEX][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9462036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462058	0.82[YRI][hapmap]
rs9469963	0.82[YRI][hapmap]
rs9469986	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv462637	chr6:11710554-11733777	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv600990	chr6:11710554-11733777	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3734273	C6orf105	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11708400-11716800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr6:11709000-11715800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:11709000-11716400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr6:11709800-11716400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:11710000-11715200	Enhancers	Fetal Thymus	thymus
6	chr6:11710800-11731000	Weak transcription	Gastric	stomach
7	chr6:11711200-11715400	Flanking Active TSS	GM12878-XiMat	blood
8	chr6:11711200-11731000	Weak transcription	Fetal Intestine Small	intestine
9	chr6:11711400-11715400	Enhancers	Primary B cells from cord blood	blood
10	chr6:11711400-11718400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:11711400-11719200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:11711600-11715200	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:11711600-11731800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:11711800-11715000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:11711800-11715800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:11712200-11715800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:11712200-11718400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:11712400-11721000	Weak transcription	HSMM	muscle
19	chr6:11712600-11716000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:11712800-11716400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:11712800-11716800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr6:11713000-11715200	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:11713200-11716400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:11713200-11721000	Weak transcription	HMEC	breast
25	chr6:11713400-11723000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:11713400-11724600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:11713600-11718400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:11713600-11718600	Weak transcription	NHLF	lung
29	chr6:11713600-11727600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:11713800-11723200	Weak transcription	HSMMtube	muscle
31	chr6:11714000-11719200	Weak transcription	NHEK	skin
32	chr6:11714200-11715000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:11714200-11715200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr6:11714200-11715600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr6:11714600-11715200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:11714600-11731600	Weak transcription	Small Intestine	intestine
37	chr6:11714800-11715000	Enhancers	Right Atrium	heart
38	chr6:11714800-11715200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:11714800-11715200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
40	chr6:11714800-11715200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr6:11714800-11715200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:11714800-11715200	Enhancers	Spleen	Spleen
43	chr6:11714800-11715600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:11714800-11715800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:11714800-11715800	Enhancers	Dnd41	blood
46	chr6:11714800-11716000	Enhancers	Primary T cells from cord blood	blood

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