Variant report

Variant	rs3734400
Chromosome Location	chr6:11184481-11184482
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11181022..11183446-chr6:11183581..11185850,2	MCF-7	breast:
2	chr6:11182279..11185693-chr6:11230831..11233757,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11162400-11185400	Weak transcription	Esophagus	oesophagus
2	chr6:11171800-11185400	Weak transcription	Gastric	stomach
3	chr6:11172800-11195000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:11173200-11184600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:11173200-11184800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:11173200-11184800	Weak transcription	Pancreas	Pancrea
7	chr6:11173200-11185400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:11173200-11185400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:11173200-11185400	Weak transcription	Ovary	ovary
10	chr6:11173200-11187600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:11173400-11185400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:11173400-11185400	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:11173400-11185600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:11173800-11184600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:11174000-11185000	Weak transcription	Fetal Heart	heart
16	chr6:11174800-11185400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:11175000-11185400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:11178400-11190000	Weak transcription	Brain Anterior Caudate	brain
19	chr6:11179000-11202200	Weak transcription	Brain Substantia Nigra	brain
20	chr6:11180000-11185400	Weak transcription	Brain Angular Gyrus	brain
21	chr6:11180200-11185600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:11180200-11190200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:11180200-11194600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:11180400-11185000	Weak transcription	Fetal Brain Male	brain
25	chr6:11180600-11185400	Weak transcription	Stomach Mucosa	stomach
26	chr6:11180600-11194400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:11180800-11184600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:11180800-11185000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:11180800-11194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:11181000-11184800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:11181000-11185600	Weak transcription	HMEC	breast
32	chr6:11181600-11196200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:11181800-11184800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:11182000-11185400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:11182000-11187800	Weak transcription	NHDF-Ad	bronchial
36	chr6:11182000-11194000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:11182200-11188400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:11182200-11190000	Weak transcription	Fetal Lung	lung
39	chr6:11182400-11184600	Weak transcription	Dnd41	blood
40	chr6:11182400-11185400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:11182400-11194000	Strong transcription	NH-A	brain
42	chr6:11182400-11195200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr6:11182600-11185400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:11182600-11185800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:11182600-11194800	Strong transcription	Primary B cells from cord blood	blood
46	chr6:11182800-11185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:11182800-11185400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:11182800-11185600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr6:11182800-11187800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:11183000-11184800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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