Variant report

Variant	rs3734697
Chromosome Location	chr6:44119676-44119677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:44069858..44070730-chr6:44119221..44119832,2	MCF-7	breast:
2	chr6:44064311..44064903-chr6:44119380..44120206,3	MCF-7	breast:
3	chr6:44119317..44120169-chr6:44306218..44306929,3	K562	blood:
4	chr6:44067253..44068005-chr6:44119288..44119882,2	K562	blood:
5	chr6:44064487..44065451-chr6:44119305..44119965,4	K562	blood:
6	chr6:44117525..44119749-chr6:44162549..44165761,3	K562	blood:
7	chr6:44119482..44120143-chr6:44306003..44307071,3	MCF-7	breast:
8	chr6:44106700..44107694-chr6:44119339..44119850,2	K562	blood:
9	chr6:44119338..44121268-chr6:44217080..44219082,2	K562	blood:
10	chr6:44118511..44121325-chr6:44203702..44206845,3	K562	blood:
11	chr6:44119282..44120002-chr6:44201581..44202498,4	MCF-7	breast:
12	chr6:44118243..44122722-chr6:44213509..44216822,7	K562	blood:
13	chr6:44093185..44096453-chr6:44116790..44121295,7	MCF-7	breast:
14	chr6:44116712..44124292-chr6:44220837..44227181,13	K562	blood:
15	chr6:44066542..44068074-chr6:44118017..44119691,2	MCF-7	breast:
16	chr5:133706361..133708033-chr6:44118347..44120356,2	K562	blood:
17	chr6:44098943..44101929-chr6:44117025..44119826,2	MCF-7	breast:
18	chr6:44109933..44111723-chr6:44118302..44120001,2	MCF-7	breast:
19	chr6:44067492..44068479-chr6:44119267..44120182,8	MCF-7	breast:
20	chr6:44113768..44117098-chr6:44117855..44119857,3	MCF-7	breast:
21	chr6:43691694..43692201-chr6:44119523..44120174,2	K562	blood:
22	chr6:44119558..44120320-chr6:44224896..44225702,3	K562	blood:
23	chr6:44118934..44120172-chr6:44201616..44202538,11	MCF-7	breast:
24	chr6:44117982..44119936-chr6:44124617..44126321,2	MCF-7	breast:
25	chr6:44117363..44120323-chr6:44194006..44196819,2	K562	blood:
26	chr6:44064116..44065383-chr6:44119168..44120496,12	MCF-7	breast:
27	chr6:44119509..44120094-chr6:44232568..44233208,2	MCF-7	breast:
28	chr6:44095576..44096087-chr6:44119284..44120059,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000265700	Chromatin interaction
ENSG00000096384	Chromatin interaction
ENSG00000112759	Chromatin interaction
ENSG00000006837	Chromatin interaction
ENSG00000137216	Chromatin interaction
ENSG00000157593	Chromatin interaction
ENSG00000273345	Chromatin interaction
ENSG00000119048	Chromatin interaction
ENSG00000180992	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10948121	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12191873	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12199128	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12206251	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12206795	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2064639	1.00[AFR][1000 genomes]
rs2064640	1.00[AFR][1000 genomes]
rs2092870	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2236061	1.00[AFR][1000 genomes]
rs3734696	1.00[EUR][1000 genomes]
rs4628095	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711764	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4711766	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4714738	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4714750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4714759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714761	0.97[ASN][1000 genomes]
rs4714762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62401766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62403189	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9349270	1.00[AFR][1000 genomes]
rs9349271	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9349272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9349275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357432	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9369448	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9369449	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9369450	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9369453	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9369454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9369456	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369457	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9369459	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9381287	1.00[AFR][1000 genomes]
rs9381294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394984	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44101800-44124000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:44102200-44119800	Strong transcription	Fetal Intestine Small	intestine
3	chr6:44103800-44124600	Strong transcription	Fetal Stomach	stomach
4	chr6:44108600-44122600	Weak transcription	A549	lung
5	chr6:44109800-44124200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:44111000-44121000	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr6:44113200-44122400	Strong transcription	Fetal Brain Female	brain
8	chr6:44113200-44122400	Strong transcription	NHEK	skin
9	chr6:44113400-44122400	Strong transcription	NHLF	lung
10	chr6:44113600-44122600	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:44114000-44129400	Weak transcription	NHDF-Ad	bronchial
12	chr6:44114200-44128400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:44114200-44129200	Weak transcription	NH-A	brain
14	chr6:44115200-44129400	Weak transcription	Hela-S3	cervix
15	chr6:44115600-44128400	Weak transcription	Dnd41	blood
16	chr6:44116800-44120400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:44117200-44120200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:44117200-44124200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:44117200-44131200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:44117400-44129200	Weak transcription	HSMM	muscle
21	chr6:44117600-44119800	Enhancers	Fetal Heart	heart
22	chr6:44117600-44129400	Weak transcription	HSMMtube	muscle
23	chr6:44117800-44120400	Weak transcription	Osteobl	bone
24	chr6:44117800-44120600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:44117800-44121400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:44117800-44121800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:44117800-44130800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:44118000-44122600	Weak transcription	Aorta	Aorta
29	chr6:44118000-44123600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr6:44118000-44124200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:44118000-44124200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:44118000-44124400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:44118000-44125000	Weak transcription	Brain Substantia Nigra	brain
34	chr6:44118000-44126200	Weak transcription	Fetal Lung	lung
35	chr6:44118200-44120000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:44118200-44121400	Weak transcription	Psoas Muscle	Psoas
37	chr6:44118200-44124000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:44118200-44124400	Weak transcription	Brain Angular Gyrus	brain
39	chr6:44118200-44129000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:44118400-44119800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:44118400-44120200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr6:44118400-44122800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:44118400-44124000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr6:44118400-44124000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:44118400-44124800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:44118600-44120200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:44118600-44120400	Weak transcription	Fetal Intestine Large	intestine
48	chr6:44118600-44130600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:44118800-44119800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:44118800-44120200	Weak transcription	Liver	Liver

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