Variant report

Variant	rs3735083
Chromosome Location	chr7:150326923-150326924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1009861	1.00[CHD][hapmap];0.92[GIH][hapmap]
rs12669961	1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap]
rs12672622	1.00[AMR][1000 genomes]
rs62502275	1.00[AMR][1000 genomes]
rs6464084	0.92[GIH][hapmap]
rs6944535	0.93[ASN][1000 genomes]
rs6945074	0.93[ASN][1000 genomes]
rs6964548	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3388935	chr7:150301204-150374532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150322200-150328400	Weak transcription	Fetal Intestine Small	intestine
2	chr7:150323200-150327200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:150323200-150327400	Genic enhancers	Primary T cells fromperipheralblood	blood
4	chr7:150323200-150327400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
5	chr7:150323200-150327600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:150323200-150327600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:150323200-150327800	Genic enhancers	Spleen	Spleen
8	chr7:150323400-150327600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:150323400-150327600	Genic enhancers	Primary monocytes fromperipheralblood	blood
10	chr7:150323400-150327600	Strong transcription	Thymus	Thymus
11	chr7:150323400-150327800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:150323400-150328200	Weak transcription	Brain Substantia Nigra	brain
13	chr7:150323600-150327200	Genic enhancers	Adipose Nuclei	Adipose
14	chr7:150323600-150327400	Enhancers	Right Atrium	heart
15	chr7:150323600-150328000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
16	chr7:150323800-150328000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:150323800-150328400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr7:150324000-150327600	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
19	chr7:150324000-150327600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:150324000-150329200	Transcr. at gene 5' and 3'	Dnd41	blood
21	chr7:150324400-150327000	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr7:150324600-150327000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
23	chr7:150324800-150327600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:150325000-150327000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr7:150325000-150328200	Weak transcription	Colonic Mucosa	Colon
26	chr7:150325400-150327200	Strong transcription	Primary hematopoietic stem cells	blood
27	chr7:150325400-150327800	Weak transcription	Pancreas	Pancrea
28	chr7:150325600-150327600	Weak transcription	Gastric	stomach
29	chr7:150325600-150328400	Enhancers	Right Ventricle	heart
30	chr7:150326000-150327000	Genic enhancers	HUVEC	blood vessel
31	chr7:150326000-150327400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:150326200-150327400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr7:150326200-150327400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:150326200-150327600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr7:150326200-150327600	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
36	chr7:150326400-150327000	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
37	chr7:150326400-150327000	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr7:150326400-150327400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:150326400-150327600	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
40	chr7:150326400-150327600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr7:150326400-150327800	Enhancers	Left Ventricle	heart
42	chr7:150326400-150328200	Weak transcription	Fetal Stomach	stomach
43	chr7:150326600-150327400	Weak transcription	Placenta	Placenta
44	chr7:150326600-150328000	Enhancers	Fetal Heart	heart
45	chr7:150326600-150328000	Enhancers	Fetal Muscle Leg	muscle
46	chr7:150326800-150327200	Weak transcription	Esophagus	oesophagus
47	chr7:150326800-150327400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr7:150326800-150327400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr7:150326800-150327600	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
50	chr7:150326800-150327600	Weak transcription	Fetal Muscle Trunk	muscle

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