Variant report

Variant	rs3735252
Chromosome Location	chr7:97736577-97736578
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:13049394..13049962-chr7:97735896..97736709,2	Hela-S3	cervix:
2	chr7:97736360..97738487-chr7:97758409..97762337,3	K562	blood:
3	chr7:97735652..97737286-chr7:97753750..97756683,2	MCF-7	breast:
4	chr7:97721025..97723015-chr7:97736294..97738071,2	MCF-7	breast:
5	chr20:48807269..48810011-chr7:97735604..97737144,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164715	Chromatin interaction
ENSG00000172216	Chromatin interaction
ENSG00000179218	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10215577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216274	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227681	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10230846	0.80[ASN][1000 genomes]
rs10231625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10243993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252338	0.92[AFR][1000 genomes]
rs10256262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10276472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282640	0.91[ASN][1000 genomes]
rs12333559	0.92[AFR][1000 genomes]
rs12704966	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12704976	0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs13221415	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13221480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13228463	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13228540	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13241860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247901	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1532381	0.84[ASN][1000 genomes]
rs17169317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169330	0.87[ASN][1000 genomes]
rs28415802	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681561	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34228515	1.00[CEU][hapmap]
rs34320281	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34353490	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35428901	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36081491	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465655	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958785	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980318	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73404186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788997	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv1816676	chr7:97676259-97868033	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv831066	chr7:97726879-97890550	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	esv3411371	chr7:97735041-97737589	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97735400-97737400	Active TSS	Stomach Smooth Muscle	stomach
2	chr7:97735600-97736800	Active TSS	Brain Substantia Nigra	brain
3	chr7:97735600-97737000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:97735600-97737000	Active TSS	Rectal Smooth Muscle	rectum
5	chr7:97735600-97737200	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr7:97735600-97737400	Active TSS	Brain Germinal Matrix	brain
7	chr7:97735800-97736800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:97735800-97737000	Active TSS	Brain Hippocampus Middle	brain
9	chr7:97735800-97737200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:97735800-97737200	Active TSS	Esophagus	oesophagus
11	chr7:97735800-97737200	Active TSS	Fetal Kidney	kidney
12	chr7:97735800-97737400	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr7:97735800-97737400	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr7:97735800-97737400	Active TSS	Thymus	Thymus
15	chr7:97735800-97738000	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr7:97735800-97738000	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr7:97735800-97738000	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr7:97735800-97738000	Active TSS	Brain Angular Gyrus	brain
19	chr7:97736000-97736600	Active TSS	Primary B cells from cord blood	blood
20	chr7:97736000-97736800	Active TSS	Primary monocytes fromperipheralblood	blood
21	chr7:97736000-97736800	Active TSS	Primary B cells from peripheral blood	blood
22	chr7:97736000-97736800	Active TSS	Primary T cells fromperipheralblood	blood
23	chr7:97736000-97736800	Active TSS	Primary hematopoietic stem cells	blood
24	chr7:97736000-97736800	Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr7:97736000-97736800	Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr7:97736000-97736800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:97736000-97736800	Active TSS	Adipose Nuclei	Adipose
28	chr7:97736000-97736800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr7:97736000-97736800	Active TSS	Fetal Muscle Leg	muscle
30	chr7:97736000-97736800	Active TSS	HUVEC	blood vessel
31	chr7:97736000-97736800	Active TSS	Monocytes-CD14+_RO01746	blood
32	chr7:97736000-97737000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:97736000-97737000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:97736000-97737000	Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr7:97736000-97737000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:97736000-97737000	Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr7:97736000-97737000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr7:97736000-97737000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:97736000-97737000	Active TSS	Spleen	Spleen
40	chr7:97736000-97737000	Active TSS	Dnd41	blood
41	chr7:97736000-97737000	Active TSS	NH-A	brain
42	chr7:97736000-97737000	Active TSS	Osteobl	bone
43	chr7:97736000-97737200	Active TSS	H1 Cell Line	embryonic stem cell
44	chr7:97736000-97737200	Active TSS	H9 Cell Line	embryonic stem cell
45	chr7:97736000-97737200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:97736000-97737200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:97736000-97737200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr7:97736000-97737200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr7:97736000-97737200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:97736000-97737200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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