Variant report

Variant	rs373542689
Chromosome Location	chr6:160546969-160546970
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr6:160546043-160547325	HepG2	liver:	n/a	n/a
2	MYBL2	chr6:160545995-160547146	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
SLC22A1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	esv1806919	chr6:160544944-160548762	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1810990	chr6:160545036-160548681	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1820824	chr6:160545036-160548681	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1825870	chr6:160545036-160548681	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1851188	chr6:160545036-160548681	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv13999	chr6:160545917-160553013	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv1824401	chr6:160546254-160548407	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv1844805	chr6:160546254-160548681	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv1818799	chr6:160546349-160548283	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv1824145	chr6:160546349-160548544	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv1832280	chr6:160546349-160548544	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv1849743	chr6:160546349-160548544	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1822479	chr6:160546443-160548407	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160526200-160548600	Weak transcription	K562	blood
2	chr6:160527400-160549200	Weak transcription	Colonic Mucosa	Colon
3	chr6:160527400-160550000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:160529400-160548000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:160529400-160559200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:160530400-160548600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:160530800-160553400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:160533400-160552800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:160538800-160557600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:160539000-160553000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:160539400-160554200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:160539400-160554800	Weak transcription	Spleen	Spleen
13	chr6:160539400-160558000	Weak transcription	Gastric	stomach
14	chr6:160539400-160559400	Weak transcription	Brain Angular Gyrus	brain
15	chr6:160539400-160559400	Weak transcription	HSMMtube	muscle
16	chr6:160539400-160559600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:160539400-160580400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:160539600-160553400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:160539600-160574600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:160539800-160549000	Weak transcription	Primary T cells from cord blood	blood
21	chr6:160539800-160553400	Weak transcription	Ovary	ovary
22	chr6:160540200-160576200	Weak transcription	Right Ventricle	heart
23	chr6:160540400-160568800	Weak transcription	Esophagus	oesophagus
24	chr6:160541600-160553200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:160543200-160561400	Weak transcription	Right Atrium	heart
26	chr6:160543400-160558600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:160543800-160551200	Weak transcription	Fetal Stomach	stomach
28	chr6:160544200-160552200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:160544200-160553000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:160544400-160547600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr6:160545000-160555200	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:160545000-160559000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:160545200-160552200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:160545200-160553000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:160546000-160557000	Weak transcription	Pancreas	Pancrea
36	chr6:160546000-160559200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:160546200-160547200	Weak transcription	Liver	Liver
38	chr6:160546400-160560200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:160546800-160547800	Weak transcription	Fetal Intestine Small	intestine
40	chr6:160546800-160548200	Weak transcription	HepG2	liver
41	chr6:160546800-160550200	Weak transcription	Fetal Intestine Large	intestine

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