Variant report

Variant	rs373546028
Chromosome Location	chr6:146350683-146350684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1029440	chr6:146349442-146407453	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146348400-146351400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:146348600-146351200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
3	chr6:146348600-146351200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:146348600-146351400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:146348600-146351400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:146348600-146351600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:146348600-146351600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:146348800-146350800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:146348800-146351200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
10	chr6:146348800-146351400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr6:146349000-146351800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
12	chr6:146349600-146350800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:146349800-146350800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
14	chr6:146349800-146351400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr6:146349800-146351400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
16	chr6:146350000-146351000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:146350000-146351000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:146350000-146351800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
19	chr6:146350200-146351200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr6:146350200-146351200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
21	chr6:146350200-146351400	Bivalent/Poised TSS	Fetal Brain Male	brain
22	chr6:146350400-146351200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:146350400-146351200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:146350400-146351800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
25	chr6:146350600-146350800	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:146350600-146350800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr6:146350600-146350800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:146350600-146351000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:146350600-146351000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:146350600-146351600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain

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