Variant report

Variant	rs373559947
Chromosome Location	chr3:194831555-194831556
allele	-/GT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACAP2-3	chr3:194831292-194831678	NONHSAT094141

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007697	chr3:194554814-195009930	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536873	chr3:194554814-195009930	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv997779	chr3:194687093-194885936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv536874	chr3:194687093-194885936	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1009796	chr3:194737333-195124248	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	esv1813153	chr3:194754532-194851746	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878136	chr3:194779412-194845226	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1012592	chr3:194814446-194931562	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
9	nsv536875	chr3:194814446-194931562	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
10	nsv1001492	chr3:194814990-194935397	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
11	nsv461126	chr3:194817484-194961888	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
12	nsv592981	chr3:194817484-194961888	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
13	nsv878137	chr3:194822098-194900432	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
14	nsv963494	chr3:194826599-194833987	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv3339583	chr3:194828063-194833661	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv3338798	chr3:194829713-194832111	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3399785	chr3:194831370-194831624	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:194822000-194846600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:194823800-194833200	Weak transcription	HSMM	muscle
3	chr3:194824000-194838800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:194825800-194838400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:194826600-194835800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:194826800-194838600	Weak transcription	Hela-S3	cervix
7	chr3:194827200-194831800	Weak transcription	GM12878-XiMat	blood
8	chr3:194827200-194838800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:194827200-194838800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:194827400-194833400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:194827400-194838400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:194827400-194853600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:194827400-194861200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:194827600-194831800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:194827600-194833400	Weak transcription	Ovary	ovary
16	chr3:194827600-194834000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:194827600-194834400	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:194827600-194838000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:194827600-194838000	Weak transcription	NH-A	brain
20	chr3:194827600-194838600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:194827600-194838600	Weak transcription	Stomach Mucosa	stomach
22	chr3:194827600-194839200	Weak transcription	Psoas Muscle	Psoas
23	chr3:194827600-194840000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:194827600-194840200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:194827600-194840800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:194827600-194841200	Weak transcription	Brain Anterior Caudate	brain
27	chr3:194827600-194841200	Weak transcription	Brain Substantia Nigra	brain
28	chr3:194827800-194831600	Weak transcription	Placenta	Placenta
29	chr3:194827800-194833200	Weak transcription	Fetal Brain Female	brain
30	chr3:194827800-194834400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:194827800-194836800	Weak transcription	Fetal Heart	heart
32	chr3:194827800-194840000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:194827800-194840000	Weak transcription	Brain Angular Gyrus	brain
34	chr3:194828800-194840200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr3:194830000-194831600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:194830000-194831600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:194830000-194831600	ZNF genes & repeats	Fetal Brain Male	brain
38	chr3:194830000-194831600	ZNF genes & repeats	Fetal Kidney	kidney
39	chr3:194830000-194831600	Strong transcription	HUVEC	blood vessel
40	chr3:194830000-194831800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
41	chr3:194830000-194831800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:194830200-194831600	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr3:194830200-194831600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr3:194830200-194831600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr3:194830200-194831600	Strong transcription	Dnd41	blood
46	chr3:194830200-194832000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr3:194830200-194832800	Strong transcription	Primary T cells from cord blood	blood
48	chr3:194830400-194831600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:194830400-194831800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:194830800-194831600	Strong transcription	NHEK	skin

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