Variant report

Variant	rs373569626
Chromosome Location	chr5:154393369-154393370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv11005	chr5:154393341-154398169	Bivalent/Poised TSS Active TSS Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154393200-154393600	Active TSS	H9 Cell Line	embryonic stem cell
2	chr5:154393200-154393600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:154393200-154393600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr5:154393200-154393600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:154393200-154393600	Active TSS	Dnd41	blood
6	chr5:154393200-154393600	Bivalent/Poised TSS	Hela-S3	cervix
7	chr5:154393200-154393600	Active TSS	K562	blood
8	chr5:154393200-154393600	Active TSS	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links