Variant report

Variant	rs3735812
Chromosome Location	chr8:11617365-11617366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13281294	1.00[ASN][1000 genomes]
rs55980825	1.00[AMR][1000 genomes]
rs804275	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8191516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv917963	chr8:11540723-11751798	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1027378	chr8:11541739-11858466	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1028229	chr8:11575762-11805961	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv539475	chr8:11575762-11805961	Flanking Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv428514	chr8:11580381-11765706	Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv916483	chr8:11590294-11672038	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1034014	chr8:11602337-11858466	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11606200-11617400	Strong transcription	HepG2	liver
2	chr8:11607000-11622800	Weak transcription	Stomach Mucosa	stomach
3	chr8:11608800-11619400	Strong transcription	Duodenum Mucosa	Duodenum
4	chr8:11609200-11618600	Strong transcription	Ovary	ovary
5	chr8:11610200-11618400	Strong transcription	Liver	Liver
6	chr8:11610600-11621200	Strong transcription	Fetal Intestine Small	intestine
7	chr8:11611400-11618000	Strong transcription	Pancreas	Pancrea
8	chr8:11614400-11619200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:11615200-11617600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr8:11615200-11618200	Strong transcription	Gastric	stomach
11	chr8:11615800-11617800	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr8:11615800-11626800	Weak transcription	Left Ventricle	heart
13	chr8:11616200-11617400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:11616600-11617400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:11616800-11617400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:11616800-11617400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:11616800-11617400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:11616800-11617400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr8:11616800-11617400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:11616800-11617400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:11616800-11617400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:11616800-11617400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:11616800-11617400	Bivalent Enhancer	Adipose Nuclei	Adipose
24	chr8:11616800-11617400	Genic enhancers	Right Ventricle	heart
25	chr8:11616800-11617800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr8:11616800-11618400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:11616800-11618600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr8:11617000-11617400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr8:11617000-11617400	Enhancers	HSMM	muscle
30	chr8:11617000-11622800	Weak transcription	Fetal Heart	heart
31	chr8:11617000-11623000	Weak transcription	Placenta	Placenta
32	chr8:11617000-11626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr8:11617200-11617400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr8:11617200-11617400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr8:11617200-11617800	Bivalent Enhancer	Fetal Stomach	stomach
36	chr8:11617200-11618200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr8:11617200-11619400	Weak transcription	HSMMtube	muscle
38	chr8:11617200-11619600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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