Variant report

Variant	rs3735884
Chromosome Location	chr8:99194572-99194573
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99193362..99195766-chr8:99196470..99198946,2	MCF-7	breast:
2	chr8:99192481..99195467-chr8:99200110..99202473,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10955157	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10955158	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12542592	0.94[ASN][1000 genomes]
rs12542593	0.94[ASN][1000 genomes]
rs12542608	0.94[ASN][1000 genomes]
rs12547555	1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12549134	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13263648	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1901363	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2122929	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3735883	0.86[ASN][1000 genomes]
rs55772672	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55975205	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56215918	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62522239	0.94[EUR][1000 genomes]
rs62522241	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62522242	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62522245	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62522247	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62522248	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62522249	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62524189	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6985720	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6995263	0.94[ASN][1000 genomes]
rs7005911	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7016814	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72664827	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891216	chr8:99153160-99209248	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv14716	chr8:99169690-99199971	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99191400-99196400	Weak transcription	Right Ventricle	heart
2	chr8:99191600-99196600	Weak transcription	Left Ventricle	heart
3	chr8:99191600-99197600	Weak transcription	Esophagus	oesophagus
4	chr8:99191600-99203000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:99191600-99243800	Weak transcription	Spleen	Spleen
6	chr8:99192000-99196200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:99192200-99196200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:99192200-99196400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:99192200-99196600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:99192200-99196600	Weak transcription	Right Atrium	heart
11	chr8:99192200-99201000	Weak transcription	Fetal Heart	heart
12	chr8:99192200-99205800	Weak transcription	Fetal Intestine Small	intestine
13	chr8:99192200-99210600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:99192200-99214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr8:99192400-99196200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:99192400-99196200	Weak transcription	Osteobl	bone
17	chr8:99192400-99196800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:99192600-99194800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:99192600-99195800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr8:99192600-99196000	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:99192600-99196200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:99192600-99196200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:99192600-99196200	Weak transcription	NHDF-Ad	bronchial
24	chr8:99192600-99196400	Weak transcription	HSMMtube	muscle
25	chr8:99192600-99197400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr8:99192800-99210400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:99193400-99206400	Weak transcription	Pancreas	Pancrea
28	chr8:99194000-99196600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr8:99194400-99196600	Weak transcription	Ovary	ovary
30	chr8:99194400-99198000	Weak transcription	Lung	lung

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