Variant report

Variant	rs3735888
Chromosome Location	chr8:99206874-99206875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99184801..99187794-chr8:99204671..99207468,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17288913	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891216	chr8:99153160-99209248	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99191600-99243800	Weak transcription	Spleen	Spleen
2	chr8:99192200-99210600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:99192200-99214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:99192800-99210400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:99194800-99216600	Weak transcription	Colonic Mucosa	Colon
6	chr8:99197000-99209200	Weak transcription	HSMMtube	muscle
7	chr8:99197000-99210400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:99197000-99219000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:99197800-99215400	Weak transcription	Fetal Stomach	stomach
10	chr8:99198000-99210400	Weak transcription	Osteobl	bone
11	chr8:99198000-99217000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:99198200-99207200	Weak transcription	Esophagus	oesophagus
13	chr8:99198200-99215200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:99198200-99239200	Weak transcription	Lung	lung
15	chr8:99201800-99214400	Weak transcription	Left Ventricle	heart
16	chr8:99202000-99215200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:99202000-99215200	Weak transcription	NHDF-Ad	bronchial
18	chr8:99203600-99210600	Weak transcription	Adipose Nuclei	Adipose
19	chr8:99203800-99252600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr8:99204000-99214200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr8:99204600-99214800	Weak transcription	Gastric	stomach
22	chr8:99205200-99207400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:99205200-99214400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:99205200-99214400	Weak transcription	Fetal Intestine Large	intestine
25	chr8:99205200-99259600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr8:99205400-99214600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:99205600-99207200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:99205600-99214600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr8:99205600-99220000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:99206400-99207800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr8:99206400-99216600	Weak transcription	Aorta	Aorta
32	chr8:99206600-99213200	Weak transcription	Ovary	ovary
33	chr8:99206600-99224400	Weak transcription	Fetal Intestine Small	intestine
34	chr8:99206600-99239800	Weak transcription	Pancreas	Pancrea

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