Variant report

Variant	rs373605608
Chromosome Location	chr3:20102606-20102607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:20081053..20084896-chr3:20098793..20102867,5	K562	blood:

Variant related genes	Relation type
ENSG00000114166	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825914	chr3:19549859-20137270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv1833006	chr3:19562271-20389045	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1833139	chr3:19579860-20121349	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1010613	chr3:19942032-20461486	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv1826030	chr3:19972766-20170581	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv1825988	chr3:19976375-20102773	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv1826830	chr3:19982972-20632072	Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv997486	chr3:20006702-20113989	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv1829542	chr3:20009231-20384627	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv834627	chr3:20068115-20227975	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv433359	chr3:20090908-20587572	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
12	nsv470450	chr3:20096735-20389045	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	esv3334948	chr3:20102448-20105046	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:20086200-20102800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:20096600-20106400	Weak transcription	Fetal Intestine Large	intestine
3	chr3:20097200-20104600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:20097200-20106400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:20099000-20122600	Weak transcription	Aorta	Aorta
6	chr3:20099200-20106000	Weak transcription	Right Ventricle	heart
7	chr3:20099400-20105400	Weak transcription	Brain Angular Gyrus	brain
8	chr3:20099400-20105800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:20099400-20106400	Weak transcription	Ovary	ovary
10	chr3:20099400-20106600	Weak transcription	Pancreas	Pancrea
11	chr3:20099400-20108600	Weak transcription	Fetal Stomach	stomach
12	chr3:20099400-20112600	Weak transcription	HSMMtube	muscle
13	chr3:20099400-20112800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:20099400-20122600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:20099400-20122800	Weak transcription	Lung	lung
16	chr3:20099600-20104200	Weak transcription	Brain Substantia Nigra	brain
17	chr3:20099600-20106000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:20099800-20104000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:20099800-20104000	Weak transcription	Left Ventricle	heart
20	chr3:20099800-20106600	Weak transcription	Spleen	Spleen
21	chr3:20100000-20109200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:20100200-20102800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:20100400-20105200	Weak transcription	Thymus	Thymus
24	chr3:20100400-20105400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:20100800-20104600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:20101000-20102800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:20101400-20102800	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr3:20101400-20103200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr3:20101400-20103200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr3:20101600-20103000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr3:20101600-20103200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:20101800-20102800	Enhancers	Psoas Muscle	Psoas
33	chr3:20102000-20102800	Enhancers	Primary B cells from peripheral blood	blood
34	chr3:20102200-20103000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr3:20102200-20103000	Enhancers	Hela-S3	cervix
36	chr3:20102200-20103200	Enhancers	Primary T cells from cord blood	blood
37	chr3:20102200-20103200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr3:20102200-20103200	Enhancers	HMEC	breast
39	chr3:20102200-20103400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:20102200-20103400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:20102200-20103400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:20102400-20102800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr3:20102400-20102800	Weak transcription	Fetal Thymus	thymus
44	chr3:20102400-20102800	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr3:20102400-20102800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr3:20102400-20103000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:20102400-20103000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
48	chr3:20102400-20103000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr3:20102400-20103000	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr3:20102400-20103000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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