Variant report

Variant	rs373627869
Chromosome Location	chr4:6955282-6955283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:6955235-6955477	K562	blood:	n/a	n/a
2	NFIC	chr4:6955268-6956165	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:6910837..6912550-chr4:6955221..6957525,2	MCF-7	breast:

Variant related genes	Relation type
TBC1D14	TF binding region
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3368478	chr4:6954301-6956199	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6928000-6969600	Weak transcription	Aorta	Aorta
2	chr4:6943800-6955400	Weak transcription	Brain Substantia Nigra	brain
3	chr4:6944800-6955400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:6945000-6955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:6945000-6970200	Weak transcription	Hela-S3	cervix
6	chr4:6945200-6955600	Weak transcription	Fetal Brain Female	brain
7	chr4:6945400-6955400	Weak transcription	Fetal Stomach	stomach
8	chr4:6945600-6955600	Weak transcription	Left Ventricle	heart
9	chr4:6945800-6965800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:6946400-6955400	Weak transcription	NHLF	lung
11	chr4:6946600-6955400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:6946600-6955800	Weak transcription	Fetal Brain Male	brain
13	chr4:6946600-6969000	Weak transcription	Dnd41	blood
14	chr4:6946800-6955400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:6946800-6955400	Weak transcription	Stomach Mucosa	stomach
16	chr4:6946800-6955400	Weak transcription	NHDF-Ad	bronchial
17	chr4:6947000-6955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:6947000-6955600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr4:6947200-6955400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:6948600-6962400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr4:6949800-6955800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:6950000-6955400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:6950200-6956600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:6950400-6955400	Weak transcription	Liver	Liver
25	chr4:6950400-6955400	Weak transcription	Colonic Mucosa	Colon
26	chr4:6950400-6955400	Weak transcription	Fetal Lung	lung
27	chr4:6950400-6955400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:6950400-6955400	Weak transcription	HepG2	liver
29	chr4:6950400-6955600	Weak transcription	Pancreas	Pancrea
30	chr4:6950400-6963800	Weak transcription	Small Intestine	intestine
31	chr4:6953600-6955400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr4:6953600-6960600	Enhancers	Fetal Thymus	thymus
33	chr4:6953800-6955400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr4:6953800-6955400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr4:6953800-6955400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:6953800-6955400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr4:6953800-6955400	Weak transcription	Osteobl	bone
38	chr4:6953800-6956000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr4:6953800-6960000	Enhancers	Placenta	Placenta
40	chr4:6954000-6955400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr4:6954000-6955400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:6954000-6955400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:6954000-6955400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr4:6954000-6955400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr4:6954000-6955400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr4:6954000-6955400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr4:6954000-6955400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr4:6954000-6955400	Weak transcription	Adipose Nuclei	Adipose
49	chr4:6954000-6955400	Weak transcription	Fetal Intestine Large	intestine
50	chr4:6954000-6955400	Weak transcription	Gastric	stomach

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