Variant report

Variant	rs3736550
Chromosome Location	chr7:66532791-66532792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17680847	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17748258	0.84[EUR][1000 genomes]
rs1851421	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57800915	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6956240	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6972674	0.82[ASN][1000 genomes]
rs73700324	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv1032575	chr7:66432853-66576034	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
5	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66483400-66551200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:66483600-66534400	Weak transcription	Aorta	Aorta
3	chr7:66487000-66576600	Weak transcription	Gastric	stomach
4	chr7:66495200-66538000	Weak transcription	Brain Germinal Matrix	brain
5	chr7:66495200-66539400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:66495200-66597200	Weak transcription	Right Ventricle	heart
7	chr7:66495400-66533200	Weak transcription	Thymus	Thymus
8	chr7:66495400-66534400	Weak transcription	Spleen	Spleen
9	chr7:66495600-66533200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:66495600-66547400	Weak transcription	Pancreas	Pancrea
11	chr7:66498600-66534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:66498600-66549400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:66501000-66540000	Weak transcription	Psoas Muscle	Psoas
14	chr7:66502400-66534400	Weak transcription	Lung	lung
15	chr7:66502400-66549600	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:66506600-66534600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:66508000-66533400	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:66508800-66533400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr7:66508800-66533800	Weak transcription	Hela-S3	cervix
20	chr7:66508800-66537600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:66508800-66538000	Weak transcription	A549	lung
22	chr7:66508800-66590400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:66509000-66533200	Weak transcription	HSMM	muscle
24	chr7:66509000-66538000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:66509000-66539600	Weak transcription	HMEC	breast
26	chr7:66509400-66533000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:66509400-66536600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:66511200-66537600	Weak transcription	Brain Substantia Nigra	brain
29	chr7:66511400-66539800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:66512400-66535000	Weak transcription	Colonic Mucosa	Colon
31	chr7:66512400-66540600	Weak transcription	HepG2	liver
32	chr7:66515600-66537600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr7:66515600-66538000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr7:66516200-66534400	Weak transcription	Placenta	Placenta
35	chr7:66516400-66533000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:66516400-66534600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:66516400-66551600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:66516600-66533200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:66516800-66533200	Weak transcription	Left Ventricle	heart
40	chr7:66516800-66540200	Weak transcription	Fetal Brain Female	brain
41	chr7:66517000-66532800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:66517000-66533800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr7:66517600-66532800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:66518400-66574200	Weak transcription	Small Intestine	intestine
45	chr7:66519200-66539800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr7:66519600-66543400	Weak transcription	Fetal Brain Male	brain
47	chr7:66521800-66538000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr7:66523400-66541000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr7:66523600-66541000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr7:66523800-66533800	Weak transcription	Fetal Muscle Leg	muscle

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