The 2.0 version of rSNPBase

Variant report

Variant rs373668306
Chromosome Location chr1:228340185-228340186
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228331400-228341800 Weak transcription Psoas Muscle Psoas
2 chr1:228331600-228341000 Genic enhancers Fetal Thymus thymus
3 chr1:228332800-228349800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr1:228333200-228342200 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr1:228333200-228344600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:228333800-228350400 Weak transcription Primary B cells from cord blood blood
7 chr1:228336000-228342000 Weak transcription Primary T killer naive cells fromperipheralblood blood
8 chr1:228336600-228340400 Enhancers Fetal Heart heart
9 chr1:228336600-228341600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr1:228336600-228342000 Weak transcription Primary T cells from cord blood blood
11 chr1:228336800-228350200 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:228337000-228341800 Weak transcription Primary hematopoietic stem cells blood
13 chr1:228337000-228342200 Weak transcription Primary T helper cells fromperipheralblood blood
14 chr1:228337000-228343000 Weak transcription Primary monocytes fromperipheralblood blood
15 chr1:228337200-228340400 Enhancers Fetal Muscle Trunk muscle
16 chr1:228337200-228342600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:228337200-228344400 Weak transcription Primary B cells from peripheral blood blood
18 chr1:228337400-228340800 Weak transcription Dnd41 blood
19 chr1:228337400-228343000 Weak transcription Brain Germinal Matrix brain
20 chr1:228337600-228343600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:228337800-228340200 Enhancers Fetal Intestine Large intestine
22 chr1:228337800-228341800 Weak transcription Primary T helper cells PMA-I stimulated --
23 chr1:228337800-228342000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:228337800-228342200 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr1:228337800-228343200 Weak transcription A549 lung
26 chr1:228337800-228349800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr1:228338000-228340200 Enhancers Hela-S3 cervix
28 chr1:228338000-228342200 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr1:228338000-228343600 Weak transcription Fetal Brain Female brain
30 chr1:228338000-228344000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
31 chr1:228338000-228349200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:228338000-228349600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr1:228338200-228340200 Weak transcription Primary neutrophils fromperipheralblood blood
34 chr1:228338200-228340400 Enhancers Placenta Placenta
35 chr1:228338200-228342000 Weak transcription Primary T cells fromperipheralblood blood
36 chr1:228338200-228342800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr1:228338200-228344800 Weak transcription Primary T regulatory cells fromperipheralblood blood
38 chr1:228338200-228344800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr1:228338200-228352400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:228338400-228340400 Genic enhancers Foreskin Melanocyte Primary Cells skin01 Skin
41 chr1:228338400-228349200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr1:228338600-228343000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr1:228338800-228340200 Enhancers Right Ventricle heart
44 chr1:228339000-228340400 Enhancers Pancreas Pancrea
45 chr1:228339000-228340600 Genic enhancers Fetal Intestine Small intestine
46 chr1:228339000-228344000 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr1:228339000-228346000 Weak transcription HMEC breast
48 chr1:228339200-228340200 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr1:228339200-228340400 Genic enhancers Fetal Stomach stomach
50 chr1:228339200-228340800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015