Variant report

Variant	rs3737360
Chromosome Location	chr21:45391255-45391256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr21:45391215-45391415	NB4	blood:	n/a	chr21:45391358-45391368
2	POLR2A	chr21:45391151-45391613	K562	blood:	n/a	n/a
3	MAX	chr21:45391182-45391429	NB4	blood:	n/a	chr21:45391358-45391368
4	POLR2A	chr21:45390976-45391735	K562	blood:	n/a	n/a
5	POLR2A	chr21:45390969-45392071	GM12878	blood:	n/a	n/a
6	POLR2A	chr21:45391178-45391538	K562	blood:	n/a	n/a
7	POLR2A	chr21:45391049-45391734	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:45390463..45393290-chr21:45430971..45433661,3	MCF-7	breast:
2	chr21:45366021..45369525-chr21:45388691..45391384,4	K562	blood:

Variant related genes	Relation type
AGPAT3	TF binding region
ENSG00000160216	Chromatin interaction
ENSG00000160218	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2329630	0.81[ASN][1000 genomes]
rs2838448	0.81[ASN][1000 genomes]
rs2838459	0.81[ASN][1000 genomes]
rs73906694	0.81[ASN][1000 genomes]
rs73906696	0.81[ASN][1000 genomes]
rs9680153	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531545	chr21:45095397-45395904	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	esv33817	chr21:45169412-46031810	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
3	nsv913887	chr21:45344799-45670770	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv913888	chr21:45351206-45428278	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv913889	chr21:45361044-45414119	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:45373000-45395200	Strong transcription	Fetal Intestine Small	intestine
2	chr21:45374400-45392400	Weak transcription	Stomach Mucosa	stomach
3	chr21:45375200-45395400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr21:45377000-45398400	Weak transcription	A549	lung
5	chr21:45377000-45400800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr21:45378200-45395000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr21:45378200-45403800	Strong transcription	Dnd41	blood
8	chr21:45378400-45395000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr21:45378600-45392800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr21:45378600-45394800	Weak transcription	Fetal Brain Male	brain
11	chr21:45378600-45400800	Weak transcription	NH-A	brain
12	chr21:45378800-45395000	Strong transcription	Duodenum Mucosa	Duodenum
13	chr21:45378800-45420200	Weak transcription	Right Atrium	heart
14	chr21:45379000-45392400	Strong transcription	Fetal Stomach	stomach
15	chr21:45379000-45393400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr21:45379000-45406000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr21:45379600-45405000	Weak transcription	NHDF-Ad	bronchial
18	chr21:45380200-45395000	Weak transcription	HMEC	breast
19	chr21:45380400-45391800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr21:45380400-45399000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr21:45381600-45392200	Weak transcription	HSMM	muscle
22	chr21:45381600-45400800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr21:45381800-45395000	Weak transcription	Fetal Kidney	kidney
24	chr21:45382000-45402600	Weak transcription	Small Intestine	intestine
25	chr21:45383200-45405400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr21:45383200-45405400	Weak transcription	Hela-S3	cervix
27	chr21:45383400-45398000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr21:45383400-45405200	Weak transcription	HUVEC	blood vessel
29	chr21:45384200-45393200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr21:45384200-45393800	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr21:45384600-45392600	Strong transcription	Gastric	stomach
32	chr21:45384600-45393000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr21:45384600-45393200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr21:45384600-45393200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr21:45384600-45393400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr21:45384600-45393800	Strong transcription	Fetal Intestine Large	intestine
37	chr21:45384800-45392400	Strong transcription	Lung	lung
38	chr21:45384800-45393800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr21:45385000-45393600	Strong transcription	Adipose Nuclei	Adipose
40	chr21:45385000-45393800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr21:45385000-45393800	Strong transcription	Thymus	Thymus
42	chr21:45385200-45393400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr21:45385200-45393600	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr21:45385200-45394000	Strong transcription	Pancreas	Pancrea
45	chr21:45385600-45393000	Strong transcription	GM12878-XiMat	blood
46	chr21:45385800-45391400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr21:45385800-45392600	Strong transcription	Spleen	Spleen
48	chr21:45386000-45392200	Strong transcription	Colonic Mucosa	Colon
49	chr21:45386000-45392800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr21:45386000-45393400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links