Variant report
| Variant | rs3737521 |
|---|---|
| Chromosome Location | chr1:158653225-158653226 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:158653068..158653568-chr17:41445238..41445752,2 | Hela-S3 | cervix: | |
| 2 | chr1:158651114..158653909-chr1:158727740..158729801,2 | K562 | blood: | |
| 3 | chr1:158651585..158653705-chr1:158746762..158749250,2 | K562 | blood: | |
| 4 | chr1:158651218..158653402-chr1:158664730..158667068,2 | K562 | blood: | |
| 5 | chr1:158653068..158654068-chr17:41445126..41445769,2 | HCT-116 | colon: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000231237 | Chromatin interaction |
| ENSG00000188340 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs2511204 | 1.00[JPT][hapmap] |
| rs2518515 | 1.00[JPT][hapmap] |
| rs2518548 | 1.00[JPT][hapmap] |
| rs2518549 | 1.00[JPT][hapmap] |
| rs2820150 | 1.00[JPT][hapmap] |
| rs2820151 | 1.00[JPT][hapmap] |
| rs2820152 | 1.00[JPT][hapmap] |
| rs2820153 | 1.00[JPT][hapmap] |
| rs2852656 | 1.00[JPT][hapmap] |
| rs2852664 | 1.00[JPT][hapmap] |
| rs2852710 | 1.00[JPT][hapmap] |
| rs2852711 | 1.00[JPT][hapmap] |
| rs2852712 | 1.00[JPT][hapmap] |
| rs4338350 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3491788 | chr1:158537183-158725907 | Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv3491789 | chr1:158537242-158725858 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv872481 | chr1:158625789-158712510 | Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv872482 | chr1:158635852-158698532 | Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 5 | nsv872483 | chr1:158635852-158712510 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:158652200-158656200 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
| 2 | chr1:158652800-158655200 | Transcr. at gene 5' and 3' | K562 | blood |
