Variant report

Variant	rs373759010
Chromosome Location	chr9:17204923-17204924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1023525	chr9:17121773-17236072	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv892659	chr9:17130360-17236376	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv892660	chr9:17134245-17269437	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv428537	chr9:17146369-17308494	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv892662	chr9:17168867-17329964	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv1031269	chr9:17204320-17316969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17191600-17207400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:17201200-17206000	Weak transcription	Liver	Liver
3	chr9:17203400-17206800	Weak transcription	Dnd41	blood
4	chr9:17203800-17207400	Weak transcription	Fetal Lung	lung
5	chr9:17204000-17205200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:17204000-17205200	Enhancers	Fetal Heart	heart
7	chr9:17204200-17205000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:17204200-17206200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:17204400-17205000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:17204400-17205000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:17204400-17205000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:17204400-17205000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:17204400-17205000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:17204400-17205000	Enhancers	Right Ventricle	heart
15	chr9:17204400-17205200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:17204400-17205200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:17204400-17205200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:17204400-17205200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:17204400-17205200	ZNF genes & repeats	Lung	lung
20	chr9:17204400-17205400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:17204400-17205400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
22	chr9:17204400-17205600	ZNF genes & repeats	Fetal Stomach	stomach
23	chr9:17204400-17206000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr9:17204600-17205000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr9:17204600-17205000	Enhancers	Left Ventricle	heart
26	chr9:17204600-17205200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr9:17204600-17205200	Enhancers	Pancreas	Pancrea
28	chr9:17204600-17236000	Weak transcription	Ovary	ovary
29	chr9:17204800-17205000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
30	chr9:17204800-17205000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr9:17204800-17205400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:17204800-17206600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:17204800-17208000	Weak transcription	Thymus	Thymus

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