Variant report

Variant	rs373798516
Chromosome Location	chr9:94485903-94485904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94484405..94487196-chr9:94488976..94490889,3	K562	blood:
2	chr9:94484329..94487574-chr9:94487693..94490602,4	K562	blood:
3	chr9:94422471..94424892-chr9:94484558..94488094,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv933375	chr9:94485207-94485904	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv934208	chr9:94485535-94486271	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv933172	chr9:94485535-94486616	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv933235	chr9:94485858-94486616	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv934276	chr9:94485858-94487406	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94458000-94489800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:94474200-94486000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:94477000-94487000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:94477200-94489800	Weak transcription	Right Atrium	heart
5	chr9:94477200-94496800	Weak transcription	NHLF	lung
6	chr9:94477200-94533000	Weak transcription	Fetal Kidney	kidney
7	chr9:94482400-94491600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:94483000-94496600	Strong transcription	Fetal Stomach	stomach
9	chr9:94483400-94486000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:94483400-94486800	Strong transcription	Colon Smooth Muscle	Colon
11	chr9:94483400-94489800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:94483400-94501600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:94483600-94487600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:94483600-94504000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:94483600-94519400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:94483800-94486200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr9:94483800-94489400	Strong transcription	Stomach Smooth Muscle	stomach
18	chr9:94484200-94486000	Weak transcription	Esophagus	oesophagus
19	chr9:94484200-94489200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:94484400-94486800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:94484400-94487000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:94484400-94487000	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:94484400-94488200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:94484400-94488400	Strong transcription	Fetal Intestine Large	intestine
25	chr9:94484400-94489000	Strong transcription	Gastric	stomach
26	chr9:94484400-94489400	Strong transcription	Fetal Intestine Small	intestine
27	chr9:94484600-94487400	Weak transcription	K562	blood
28	chr9:94484600-94488600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:94484600-94488800	Weak transcription	Placenta	Placenta
30	chr9:94484600-94489000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:94484600-94489000	Strong transcription	Ovary	ovary
32	chr9:94484800-94486400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:94484800-94487600	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr9:94485000-94486600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:94485000-94489800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:94485200-94487000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr9:94485400-94486200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:94485400-94489000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:94485600-94487200	Strong transcription	Spleen	Spleen
40	chr9:94485600-94491600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr9:94485800-94487400	Weak transcription	Fetal Lung	lung
42	chr9:94485800-94487800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr9:94485800-94498400	Weak transcription	Fetal Muscle Leg	muscle

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