Variant report

Variant rs3738568
Chromosome Location chr1:57173591-57173592
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:57144400-57173600 Weak transcription Colon Smooth Muscle Colon
2 chr1:57154200-57174800 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr1:57154400-57174600 Weak transcription Brain Anterior Caudate brain
4 chr1:57154400-57174800 Weak transcription Gastric stomach
5 chr1:57159800-57174800 Weak transcription Fetal Stomach stomach
6 chr1:57160000-57174800 Weak transcription Brain Cingulate Gyrus brain
7 chr1:57160200-57174600 Weak transcription Fetal Brain Male brain
8 chr1:57160400-57174800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr1:57162600-57174600 Weak transcription Brain Angular Gyrus brain
10 chr1:57162800-57176200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:57166200-57174800 Weak transcription H1 Cell Line embryonic stem cell
12 chr1:57166200-57178800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr1:57166600-57175600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:57166600-57175600 Weak transcription Right Ventricle heart
15 chr1:57169000-57174400 Strong transcription HUES64 Cell Line embryonic stem cell
16 chr1:57169800-57174800 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr1:57170000-57173800 Strong transcription Skeletal Muscle Female skeletal muscle
18 chr1:57170000-57174200 Weak transcription Psoas Muscle Psoas
19 chr1:57170000-57174600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr1:57170000-57175200 Weak transcription Fetal Intestine Large intestine
21 chr1:57170000-57181200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:57170200-57173600 Weak transcription Brain Hippocampus Middle brain
23 chr1:57170200-57174800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr1:57170200-57174800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr1:57170200-57174800 Weak transcription Pancreas Pancrea
26 chr1:57170200-57175200 Weak transcription Fetal Heart heart
27 chr1:57170200-57175200 Weak transcription Ovary ovary
28 chr1:57170200-57175800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:57170200-57176000 Weak transcription Pancreatic Islets Pancreatic Islet
30 chr1:57170200-57176400 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr1:57170200-57185000 Weak transcription Liver Liver
32 chr1:57170400-57176200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:57171600-57175200 Weak transcription NH-A brain
34 chr1:57171800-57173800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:57171800-57173800 Strong transcription iPS-18 Cell Line embryonic stem cell
36 chr1:57171800-57173800 Strong transcription iPS-20b Cell Line embryonic stem cell
37 chr1:57171800-57175400 Weak transcription NHLF lung
38 chr1:57172000-57176000 Weak transcription Hela-S3 cervix
39 chr1:57172200-57174800 Weak transcription Aorta Aorta
40 chr1:57172400-57174800 Weak transcription A549 lung
41 chr1:57172400-57175800 Weak transcription HepG2 liver
42 chr1:57172600-57175200 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr1:57172800-57176400 Weak transcription Cortex derived primary cultured neurospheres brain
44 chr1:57173200-57174800 Weak transcription Brain Inferior Temporal Lobe brain
45 chr1:57173400-57175000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr1:57173400-57175000 Weak transcription Breast Myoepithelial Primary Cells Breast
47 chr1:57173400-57175000 Weak transcription Fetal Brain Female brain
48 chr1:57173400-57175000 Weak transcription Fetal Muscle Trunk muscle
49 chr1:57173400-57175000 Weak transcription Fetal Muscle Leg muscle
50 chr1:57173400-57176000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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