Variant report

Variant	rs373875556
Chromosome Location	chr6:29645372-29645373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:29644877-29645442	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr6:29644812-29645381	MCF10A-Er-Src	breast:	n/a	n/a
3	SRF	chr6:29645018-29645404	ECC-1	luminal epithelium:	n/a	chr6:29645192-29645209 chr6:29645197-29645210 chr6:29645196-29645211 chr6:29645197-29645210 chr6:29645194-29645208 chr6:29645199-29645208 chr6:29645199-29645210 chr6:29645198-29645209 chr6:29645194-29645212 chr6:29645195-29645212 chr6:29645198-29645212
4	SRF	chr6:29644943-29645376	H1-hESC	embryonic stem cell:	n/a	chr6:29645192-29645209 chr6:29645197-29645210 chr6:29645196-29645211 chr6:29645197-29645210 chr6:29645194-29645208 chr6:29645199-29645208 chr6:29645199-29645210 chr6:29645198-29645209 chr6:29645194-29645212 chr6:29645195-29645212 chr6:29645198-29645212
5	MYC	chr6:29645087-29645405	MCF10A-Er-Src	breast:	n/a	n/a
6	SRF	chr6:29644984-29645462	MCF-7	breast:	n/a	chr6:29645192-29645209 chr6:29645197-29645210 chr6:29645196-29645211 chr6:29645197-29645210 chr6:29645194-29645208 chr6:29645199-29645208 chr6:29645199-29645210 chr6:29645198-29645209 chr6:29645194-29645212 chr6:29645195-29645212 chr6:29645198-29645212

Variant related genes	Relation type
ZFP57	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv883530	chr6:29645038-29677641	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
2	chr6:29639600-29647400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:29643000-29646400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:29643000-29648800	Enhancers	HMEC	breast
5	chr6:29643200-29648400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:29643400-29648400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:29643800-29647600	Enhancers	Fetal Heart	heart
8	chr6:29644400-29645400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:29644400-29645600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:29644400-29646200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr6:29644600-29645400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:29644600-29645400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:29644600-29645800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:29644600-29646000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:29644600-29647800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:29644800-29645400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:29644800-29645400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:29644800-29645400	Enhancers	GM12878-XiMat	blood
19	chr6:29644800-29645400	Flanking Active TSS	NHEK	skin
20	chr6:29644800-29645600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:29644800-29646200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:29644800-29647400	Enhancers	Hela-S3	cervix
23	chr6:29644800-29647600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr6:29644800-29648000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:29644800-29648000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:29645000-29645400	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr6:29645000-29646800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:29645000-29648000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr6:29645200-29645400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:29645200-29646200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:29645200-29648200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:29645200-29648400	Weak transcription	Primary hematopoietic stem cells	blood

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