Variant report

Variant	rs373898920
Chromosome Location	chr5:177102389-177102390
allele	-/CTTA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr5:177102141-177102525	K562	blood:	n/a	n/a
2	CTCF	chr5:177102287-177102424	ProgFib	skin:	n/a	n/a
3	CTCF	chr5:177102283-177102439	GM19240	blood:	n/a	n/a
4	CTCF	chr5:177102294-177102414	Lung_OC	lung:	n/a	n/a
5	CTCF	chr5:177102198-177102433	A549	lung:	n/a	n/a
6	CTCF	chr5:177102261-177102462	K562	blood:	n/a	n/a
7	CTCF	chr5:177102286-177102442	HUVEC	blood vessel:	n/a	n/a
8	CTCF	chr5:177102278-177102430	MCF-7	breast:	n/a	n/a
9	CTCF	chr5:177102263-177102459	GM12878	blood:	n/a	n/a
10	CTCF	chr5:177102291-177102422	Fibrobl	skin:	n/a	n/a
11	CTCF	chr5:177102259-177102440	Hela-S3	cervix:	n/a	n/a
12	CTCF	chr5:177102324-177102426	Kidney_OC	kidney:	n/a	n/a
13	CTCF	chr5:177102271-177102442	GM19239	blood:	n/a	n/a
14	CTCF	chr5:177102288-177102433	GM12892	blood:	n/a	n/a
15	CTCF	chr5:177102280-177102447	A549	lung:	n/a	n/a
16	CTCF	chr5:177102266-177102422	HepG2	liver:	n/a	n/a
17	CTCF	chr5:177102316-177102433	Spleen_OC	spleen:	n/a	n/a
18	CTCF	chr5:177102250-177102455	MCF-7	breast:	n/a	n/a
19	CTCF	chr5:177102258-177102450	GM19238	blood:	n/a	n/a
20	CTCF	chr5:177102279-177102438	NHEK	skin:	n/a	n/a
21	CTCF	chr5:177102363-177102390	MCF-7	breast:	n/a	n/a
22	CTCF	chr5:177102255-177102452	Gliobla	brain:	n/a	n/a
23	CTCF	chr5:177102109-177102470	A549	lung:	n/a	n/a
24	CTCF	chr5:177102247-177102527	A549	lung:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000246596	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv969021	chr5:177060702-177111251	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3385471	chr5:177098196-177106694	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
6	esv3518846	chr5:177099446-177106844	Active TSS Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	esv3518847	chr5:177099446-177106844	Active TSS Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
8	esv2762570	chr5:177101771-177138875	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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