Variant report

Variant	rs373908316
Chromosome Location	chr6:150931318-150931319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150931083..150932995-chr6:150934617..150936390,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv464080	chr6:150923115-150941310	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv604851	chr6:150923115-150941310	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150922400-150941400	Weak transcription	Colonic Mucosa	Colon
2	chr6:150923000-150938600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:150925600-150931600	Genic enhancers	Fetal Thymus	thymus
4	chr6:150928000-150937400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:150928200-150938600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:150928200-150944800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:150928400-150938600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:150928400-150938600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:150928400-150939600	Weak transcription	Brain Angular Gyrus	brain
10	chr6:150928400-150940600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:150928400-150952800	Weak transcription	Right Ventricle	heart
12	chr6:150928600-150933800	Weak transcription	Lung	lung
13	chr6:150928600-150933800	Weak transcription	HUVEC	blood vessel
14	chr6:150928600-150938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:150928600-150938600	Weak transcription	Brain Substantia Nigra	brain
16	chr6:150928600-150948800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:150928800-150933800	Weak transcription	Liver	Liver
18	chr6:150929000-150932200	Weak transcription	Ovary	ovary
19	chr6:150929000-150938600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:150929000-150938800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:150929400-150941400	Weak transcription	Fetal Stomach	stomach
22	chr6:150930000-150931800	Weak transcription	Primary B cells from cord blood	blood
23	chr6:150930000-150934400	Genic enhancers	Primary B cells from peripheral blood	blood
24	chr6:150930800-150931600	Enhancers	Right Atrium	heart
25	chr6:150931000-150933600	Weak transcription	Left Ventricle	heart
26	chr6:150931000-150934000	Weak transcription	Gastric	stomach
27	chr6:150931000-150938600	Weak transcription	Fetal Kidney	kidney
28	chr6:150931000-150947400	Weak transcription	Placenta	Placenta
29	chr6:150931200-150931800	Weak transcription	Aorta	Aorta
30	chr6:150931200-150932400	Enhancers	Thymus	Thymus
31	chr6:150931200-150933800	Weak transcription	Spleen	Spleen
32	chr6:150931200-150938000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links