Variant report

Variant	rs373931997
Chromosome Location	chr2:190638481-190638482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190632138..190639565-chr2:190646675..190650810,8	K562	blood:
2	chr2:190631446..190641228-chr2:190647618..190650786,10	MCF-7	breast:
3	chr2:190636758..190640017-chr2:190647080..190650145,3	MCF-7	breast:
4	chr2:190637903..190640151-chr2:190642626..190644540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128699	Chromatin interaction
ENSG00000064933	Chromatin interaction
ENSG00000231145	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3458869	chr2:190636538-190640342	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
2	esv3458870	chr2:190636538-190640342	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190627800-190642800	Weak transcription	Spleen	Spleen
2	chr2:190627800-190648200	Weak transcription	Gastric	stomach
3	chr2:190628200-190638600	Weak transcription	Colonic Mucosa	Colon
4	chr2:190628200-190642800	Weak transcription	Lung	lung
5	chr2:190628200-190643200	Weak transcription	Esophagus	oesophagus
6	chr2:190628200-190645600	Weak transcription	Pancreas	Pancrea
7	chr2:190628200-190648000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:190628200-190648000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:190628200-190648200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:190628400-190642800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:190628400-190648000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:190628600-190638800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr2:190628600-190638800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr2:190628600-190642800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:190628600-190642800	Weak transcription	Fetal Intestine Small	intestine
16	chr2:190628600-190642800	Weak transcription	Thymus	Thymus
17	chr2:190628600-190647000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:190628600-190647200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr2:190628600-190647200	Weak transcription	Stomach Mucosa	stomach
20	chr2:190628600-190648400	Weak transcription	Small Intestine	intestine
21	chr2:190628800-190638600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr2:190628800-190638800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr2:190628800-190639200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr2:190628800-190642800	Weak transcription	Fetal Stomach	stomach
25	chr2:190629000-190638600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr2:190629000-190644200	Weak transcription	Fetal Brain Male	brain
27	chr2:190629000-190647200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr2:190629200-190639400	Weak transcription	Hela-S3	cervix
29	chr2:190629800-190647000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:190630000-190646600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:190630800-190647000	Strong transcription	HSMM	muscle
32	chr2:190631000-190646200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr2:190631200-190645400	Strong transcription	Liver	Liver
34	chr2:190631200-190646200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:190631200-190647200	Strong transcription	Fetal Thymus	thymus
36	chr2:190631400-190642200	Strong transcription	NHDF-Ad	bronchial
37	chr2:190631400-190644000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr2:190631400-190646000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr2:190631400-190646000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:190631400-190646800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr2:190631600-190645000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:190631600-190645600	Strong transcription	Primary B cells from cord blood	blood
43	chr2:190631600-190646200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr2:190631600-190647000	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr2:190632000-190638600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr2:190632000-190638800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:190632000-190646600	Strong transcription	Placenta	Placenta
48	chr2:190632800-190642600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr2:190632800-190647200	Strong transcription	Primary B cells from peripheral blood	blood
50	chr2:190633000-190645200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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