Variant report

Variant	rs373949043
Chromosome Location	chr11:58395510-58395511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58390174..58392645-chr11:58393294..58395945,2	K562	blood:
2	chr11:58391033..58393588-chr11:58395119..58397288,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CNTF-2	chr11:58394908-58396001	NONHSAT021478

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58376600-58395800	Strong transcription	Fetal Thymus	thymus
2	chr11:58376600-58396200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:58376800-58395600	Strong transcription	Dnd41	blood
4	chr11:58377200-58397200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:58385200-58397000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:58385600-58400400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:58386800-58400000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:58391800-58397400	Genic enhancers	HSMM	muscle
9	chr11:58392000-58396000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:58392000-58397000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:58392000-58406000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:58392200-58397600	Weak transcription	Esophagus	oesophagus
13	chr11:58392200-58399200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:58392200-58400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:58392400-58397200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr11:58392400-58402000	Weak transcription	Fetal Intestine Small	intestine
17	chr11:58392600-58400600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:58392800-58396000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:58392800-58396600	Weak transcription	Fetal Brain Male	brain
20	chr11:58392800-58397600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:58392800-58399400	Weak transcription	Lung	lung
22	chr11:58393000-58396000	Enhancers	NHLF	lung
23	chr11:58393000-58397400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:58393000-58397600	Weak transcription	Spleen	Spleen
25	chr11:58393000-58398600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:58393000-58400000	Weak transcription	Ovary	ovary
27	chr11:58393000-58407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:58393200-58398600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:58393200-58398600	Weak transcription	Fetal Stomach	stomach
30	chr11:58393200-58399600	Weak transcription	Right Ventricle	heart
31	chr11:58393200-58400200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:58393200-58407000	Weak transcription	Thymus	Thymus
33	chr11:58393400-58396200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:58393400-58397600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:58393600-58396600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:58393600-58399000	Weak transcription	Pancreas	Pancrea
37	chr11:58393800-58396200	Weak transcription	Gastric	stomach
38	chr11:58393800-58396800	Weak transcription	Primary B cells from cord blood	blood
39	chr11:58393800-58397000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:58393800-58397200	Enhancers	NHDF-Ad	bronchial
41	chr11:58393800-58397800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:58393800-58399400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:58393800-58401000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:58393800-58406200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:58393800-58407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:58394000-58396800	Weak transcription	Brain Germinal Matrix	brain
47	chr11:58394000-58397000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:58394000-58398400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:58394000-58398800	Weak transcription	Fetal Brain Female	brain
50	chr11:58394000-58399400	Weak transcription	Liver	Liver

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