Variant report

Variant	rs373959999
Chromosome Location	chr11:73670747-73670748
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv1827060	chr11:73670645-73694754	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:73667400-73672000	Weak transcription	HSMMtube	muscle
3	chr11:73667600-73672200	Weak transcription	HSMM	muscle
4	chr11:73668800-73672400	Weak transcription	Osteobl	bone
5	chr11:73669000-73685800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:73669400-73672400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:73669800-73670800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:73669800-73672000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:73669800-73675200	Weak transcription	K562	blood
10	chr11:73669800-73681000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:73670000-73671000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr11:73670600-73670800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:73670600-73672400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links