Variant report

Variant	rs373982518
Chromosome Location	chr10:118893337-118893338
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv825577	chr10:118887637-118905958	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3386796	chr10:118893062-118895160	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118890000-118894200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
2	chr10:118890400-118899000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr10:118890600-118894600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr10:118890600-118894800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
5	chr10:118890800-118893400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr10:118890800-118893600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
7	chr10:118890800-118893600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
8	chr10:118890800-118894600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr10:118890800-118894600	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr10:118890800-118894600	Bivalent Enhancer	Fetal Stomach	stomach
11	chr10:118891000-118894400	Bivalent/Poised TSS	NHEK	skin
12	chr10:118891200-118893600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:118891400-118893600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:118891400-118893600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:118891600-118893600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:118891600-118893600	Bivalent Enhancer	Fetal Intestine Small	intestine
17	chr10:118891800-118893600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:118891800-118894600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
19	chr10:118892000-118893400	Bivalent Enhancer	Liver	Liver
20	chr10:118892000-118893400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr10:118892200-118893400	Bivalent Enhancer	Colon Smooth Muscle	Colon
22	chr10:118892200-118894200	Bivalent/Poised TSS	Fetal Brain Female	brain
23	chr10:118892200-118894600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr10:118892400-118893400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:118892400-118893600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:118892400-118893600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:118892400-118893600	Bivalent Enhancer	Fetal Heart	heart
28	chr10:118892400-118894200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
29	chr10:118892600-118893400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:118892600-118893400	Weak transcription	Gastric	stomach
31	chr10:118892600-118893400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
32	chr10:118892600-118893600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
33	chr10:118892600-118893600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:118892600-118893600	Bivalent Enhancer	Fetal Lung	lung
35	chr10:118892600-118893800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
36	chr10:118892600-118893800	Weak transcription	Pancreas	Pancrea
37	chr10:118892600-118894400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
38	chr10:118892800-118893400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
39	chr10:118892800-118893600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
40	chr10:118892800-118893800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
41	chr10:118892800-118894000	Bivalent/Poised TSS	Right Ventricle	heart
42	chr10:118893000-118893400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
43	chr10:118893000-118893600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:118893000-118893600	Bivalent Enhancer	Primary T cells from cord blood	blood
45	chr10:118893000-118894000	Active TSS	Right Atrium	heart
46	chr10:118893000-118894400	Bivalent Enhancer	Lung	lung
47	chr10:118893000-118894600	Bivalent Enhancer	Fetal Brain Male	brain
48	chr10:118893200-118893400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
49	chr10:118893200-118893400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:118893200-118893400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links