Variant report

Variant	rs374026117
Chromosome Location	chr4:88141076-88141077
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:88125915..88129051-chr4:88140439..88142912,3	MCF-7	breast:
2	chr4:87925170..87928506-chr4:88140421..88143207,4	MCF-7	breast:
3	chr4:87969741..87972043-chr4:88141021..88142542,2	MCF-7	breast:
4	chr4:87855268..87857472-chr4:88140405..88143113,3	MCF-7	breast:
5	chr4:87854638..87857344-chr4:88139505..88141852,2	K562	blood:
6	chr4:88099435..88101886-chr4:88139410..88141295,2	K562	blood:
7	chr4:88127634..88129911-chr4:88140164..88142825,2	MCF-7	breast:
8	chr4:88139395..88142439-chr4:88311139..88313328,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLHL8-1	chr4:88140676-88142542	ENSG00000250163.1

No data

Variant related genes	Relation type
ENSG00000163633	Chromatin interaction
ENSG00000198189	Chromatin interaction
ENSG00000172493	Chromatin interaction
ENSG00000248180	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1007020	chr4:88046263-88235018	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537169	chr4:88046263-88235018	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv822636	chr4:88140799-88141539	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88139800-88142400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:88140000-88142200	Active TSS	GM12878-XiMat	blood
3	chr4:88140000-88142400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:88140000-88142600	Active TSS	Brain Anterior Caudate	brain
5	chr4:88140000-88142600	Active TSS	Fetal Brain Female	brain
6	chr4:88140200-88141200	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr4:88140200-88142000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:88140200-88142400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr4:88140200-88142400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:88140200-88142400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr4:88140200-88142400	Active TSS	Muscle Satellite Cultured Cells	--
12	chr4:88140200-88142400	Active TSS	Aorta	Aorta
13	chr4:88140200-88142400	Active TSS	Brain Cingulate Gyrus	brain
14	chr4:88140200-88142400	Active TSS	Colonic Mucosa	Colon
15	chr4:88140200-88142400	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr4:88140200-88142400	Active TSS	Fetal Lung	lung
17	chr4:88140200-88142400	Active TSS	HSMM	muscle
18	chr4:88140200-88142400	Active TSS	NHDF-Ad	bronchial
19	chr4:88140200-88142400	Active TSS	NHLF	lung
20	chr4:88140200-88142600	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr4:88140200-88142600	Active TSS	Brain Angular Gyrus	brain
22	chr4:88140200-88142600	Active TSS	Brain Germinal Matrix	brain
23	chr4:88140200-88142600	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr4:88140200-88142600	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr4:88140200-88142800	Active TSS	A549	lung
26	chr4:88140400-88142000	Active TSS	NH-A	brain
27	chr4:88140400-88142200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr4:88140400-88142200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:88140400-88142200	Active TSS	Fetal Brain Male	brain
30	chr4:88140400-88142200	Active TSS	Ovary	ovary
31	chr4:88140400-88142200	Active TSS	Pancreas	Pancrea
32	chr4:88140400-88142200	Active TSS	Placenta Amnion	Placenta Amnion
33	chr4:88140400-88142400	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr4:88140400-88142400	Active TSS	H9 Cell Line	embryonic stem cell
35	chr4:88140400-88142400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:88140400-88142400	Active TSS	Left Ventricle	heart
37	chr4:88140400-88142400	Active TSS	Right Ventricle	heart
38	chr4:88140400-88142400	Active TSS	HSMMtube	muscle
39	chr4:88140600-88141600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr4:88140600-88142000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:88140600-88142000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:88140600-88142000	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr4:88140600-88142000	Active TSS	Lung	lung
44	chr4:88140600-88142000	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr4:88140600-88142000	Active TSS	HMEC	breast
46	chr4:88140600-88142200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr4:88140600-88142200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:88140600-88142200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:88140600-88142200	Active TSS	Small Intestine	intestine
50	chr4:88140600-88142200	Active TSS	Stomach Mucosa	stomach

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