Variant report

Variant	rs3740724
Chromosome Location	chr11:119859475-119859476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

No data

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-831A10.1.1-1	chr11:119859297-119859589	XLOC_009578
2	lnc-RP11-831A10.1.1-1	chr11:119858517-119859513	XLOC_009578
3	lnc-RP11-831A10.1.1-1	chr11:119859374-119859513	ENSG00000254863
4	lnc-RP11-831A10.1.1-1	chr11:119859300-119859543	ENSG00000254863
5	lnc-RP11-831A10.1.1-1	chr11:119859473-119859610	ENSG00000254863
6	lnc-RP11-831A10.1.1-1	chr11:119859300-119859589	NONHSAT024697
7	lnc-RP11-831A10.1.1-1	chr11:119859300-119859589	NONHSAT024698
8	lnc-RP11-831A10.1.1-1	chr11:119859300-119859513	NONHSAT024699
9	lnc-RP11-831A10.1.1-1	chr11:119859300-119859513	NONHSAT024700

No data

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10892507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10892511	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1944497	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1944498	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2155168	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4482041	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4938749	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4938750	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4938751	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4938752	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4938753	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4938754	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4938755	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4938756	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7107144	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7126918	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7127194	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7929916	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035918	chr11:119853069-119879255	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119854200-119862200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:119854400-119860800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:119854600-119861800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:119855200-119861000	Weak transcription	Fetal Brain Female	brain
5	chr11:119856600-119863000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:119858600-119861600	Enhancers	Fetal Heart	heart
7	chr11:119858800-119860200	Weak transcription	Right Ventricle	heart
8	chr11:119858800-119863200	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:119859000-119863200	Enhancers	Brain Anterior Caudate	brain
10	chr11:119859000-119864400	Enhancers	Brain Angular Gyrus	brain
11	chr11:119859000-119867000	Enhancers	Brain Substantia Nigra	brain
12	chr11:119859000-119867600	Enhancers	Brain Hippocampus Middle	brain
13	chr11:119859000-119867600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr11:119859200-119860000	Enhancers	Left Ventricle	heart
15	chr11:119859200-119862000	Enhancers	Brain Germinal Matrix	brain
16	chr11:119859200-119862000	Enhancers	Fetal Brain Male	brain
17	chr11:119859400-119860400	Weak transcription	Fetal Intestine Small	intestine
18	chr11:119859400-119862600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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