Variant report

Variant	rs374108475
Chromosome Location	chr11:74554342-74554343
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:74554336-74554472	MCF-7	breast:	n/a	n/a
2	POLR2A	chr11:74554133-74555800	K562	blood:	n/a	n/a
3	POLR2A	chr11:74552211-74556846	K562	blood:	n/a	n/a
4	HMGN3	chr11:74554083-74554429	K562	blood:	n/a	n/a
5	POLR2A	chr11:74553947-74554952	K562	blood:	n/a	n/a
6	POLR2A	chr11:74553890-74554499	K562	blood:	n/a	n/a
7	POLR2A	chr11:74553913-74554638	GM12878	blood:	n/a	n/a
8	POLR2A	chr11:74553979-74554515	GM12878	blood:	n/a	n/a
9	POLR2A	chr11:74553907-74554492	GM12878	blood:	n/a	n/a
10	POLR2A	chr11:74553198-74557199	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr11:74553986-74555372	HepG2	liver:	n/a	n/a
12	POLR2A	chr11:74553938-74554499	H1-hESC	embryonic stem cell:	n/a	n/a
13	FOSL2	chr11:74553976-74554594	HepG2	liver:	n/a	n/a
14	CCNT2	chr11:74554094-74554356	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74552536..74554674-chr11:74560171..74562245,2	K562	blood:
2	chr11:74551532..74554189-chr11:74554328..74556316,4	K562	blood:
3	chr11:74546385..74548948-chr11:74553952..74556769,3	K562	blood:
4	chr11:74547448..74549876-chr11:74553535..74556398,2	K562	blood:
5	chr11:74551815..74554454-chr11:74557454..74559608,2	K562	blood:
6	chr11:74449856..74451588-chr11:74552706..74555219,2	K562	blood:
7	chr11:74550798..74553553-chr11:74554025..74555880,2	MCF-7	breast:

No data

Variant related genes	Relation type
RN7SL239P	TF binding region
ENSG00000166439	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
4	nsv897916	chr11:74465068-74574677	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv8840	chr11:74553861-74558956	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74528000-74576400	Weak transcription	Stomach Mucosa	stomach
2	chr11:74538400-74559000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:74538400-74560000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:74538600-74554600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:74539200-74557200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:74541800-74556400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:74543800-74565800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:74544000-74557400	Strong transcription	Dnd41	blood
9	chr11:74544000-74557600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:74544200-74557200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:74544200-74558400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:74544200-74570800	Strong transcription	Duodenum Mucosa	Duodenum
13	chr11:74545200-74556800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr11:74545600-74564600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr11:74545600-74568400	Strong transcription	Fetal Intestine Large	intestine
16	chr11:74545800-74559800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:74545800-74560400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:74545800-74565000	Strong transcription	Fetal Muscle Leg	muscle
19	chr11:74546000-74566800	Strong transcription	Fetal Stomach	stomach
20	chr11:74546200-74559400	Strong transcription	Fetal Lung	lung
21	chr11:74547400-74556000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:74547600-74557600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:74547600-74571400	Weak transcription	Fetal Brain Male	brain
24	chr11:74547800-74555200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:74547800-74562800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:74548000-74555400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:74548000-74558200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:74548000-74560600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:74548600-74555400	Weak transcription	Small Intestine	intestine
30	chr11:74548800-74560200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:74549400-74567600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:74549800-74560400	Weak transcription	Right Atrium	heart
33	chr11:74550600-74557200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:74550600-74564600	Strong transcription	Fetal Intestine Small	intestine
35	chr11:74550800-74557200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:74550800-74557400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:74550800-74557800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:74551000-74554800	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr11:74551000-74568400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:74551200-74557400	Strong transcription	Thymus	Thymus
41	chr11:74551200-74557600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:74551200-74559200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:74551400-74556800	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:74551400-74557000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:74551400-74557800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:74551600-74560200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:74551800-74557400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:74551800-74557600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:74551800-74558000	Strong transcription	HMEC	breast
50	chr11:74552000-74557000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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