Variant report

Variant	rs3741180
Chromosome Location	chr11:67191346-67191347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67117328..67119147-chr11:67188918..67191824,2	K562	blood:
2	chr11:67190801..67193433-chr11:67271634..67274459,2	MCF-7	breast:
3	chr11:67138903..67140672-chr11:67189332..67192243,2	K562	blood:
4	chr11:67190568..67192849-chr11:67232756..67235079,2	K562	blood:
5	chr11:67187544..67192614-chr11:67201349..67205044,6	K562	blood:

Variant related genes	Relation type
ENSG00000172663	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000255949	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12791976	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12803635	1.00[AFR][1000 genomes]
rs12803820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2286621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34281447	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34614891	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35590263	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs55987642	1.00[AFR][1000 genomes]
rs71457767	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71457768	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
3	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
5	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
6	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
8	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
9	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
10	nsv897805	chr11:67155210-67283891	ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
11	nsv897806	chr11:67155210-67294308	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
12	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
13	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
14	nsv897809	chr11:67156875-67276235	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
15	nsv555254	chr11:67164495-67288594	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
16	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
17	nsv897810	chr11:67166310-67196237	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
18	nsv897811	chr11:67166984-67218909	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
19	nsv897812	chr11:67174597-67198887	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
20	nsv897813	chr11:67175692-67283891	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
21	nsv521723	chr11:67175692-67311258	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
22	nsv555255	chr11:67177797-67191449	Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
23	esv1847460	chr11:67182600-67219337	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
24	nsv524096	chr11:67186000-67224988	Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
25	nsv468604	chr11:67186000-67283891	Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
26	nsv555256	chr11:67186000-67283891	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
27	esv1811233	chr11:67186271-67193108	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67188000-67195200	Weak transcription	Fetal Lung	lung
2	chr11:67188200-67193000	Enhancers	Fetal Thymus	thymus
3	chr11:67188600-67192600	Weak transcription	Brain Angular Gyrus	brain
4	chr11:67189000-67192200	Genic enhancers	Fetal Muscle Leg	muscle
5	chr11:67189000-67194800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:67189000-67195000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:67189000-67195000	Weak transcription	HUVEC	blood vessel
8	chr11:67189000-67195000	Weak transcription	NH-A	brain
9	chr11:67189000-67195200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:67189000-67195200	Weak transcription	Fetal Brain Male	brain
11	chr11:67189200-67191400	Weak transcription	Gastric	stomach
12	chr11:67189200-67192000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:67189200-67192600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:67189200-67194800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:67189200-67194800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:67189200-67194800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:67189200-67194800	Weak transcription	Pancreas	Pancrea
18	chr11:67189200-67194800	Weak transcription	Right Atrium	heart
19	chr11:67189200-67194800	Weak transcription	Right Ventricle	heart
20	chr11:67189200-67194800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:67189200-67194800	Weak transcription	Dnd41	blood
22	chr11:67189200-67195000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:67189200-67195000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:67189200-67195200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:67189200-67195200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:67189200-67195200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:67189200-67195200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:67189200-67195200	Weak transcription	Adipose Nuclei	Adipose
29	chr11:67189200-67195200	Weak transcription	Brain Anterior Caudate	brain
30	chr11:67189200-67195200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:67189200-67195200	Weak transcription	Fetal Heart	heart
32	chr11:67189200-67195200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:67189200-67195200	Weak transcription	K562	blood
34	chr11:67189200-67195200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:67189200-67195200	Weak transcription	Osteobl	bone
36	chr11:67189200-67195400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:67189200-67195400	Weak transcription	HSMMtube	muscle
38	chr11:67189400-67191800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:67189400-67194200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:67189400-67194400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr11:67189400-67194800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:67189400-67194800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:67189400-67194800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:67189400-67194800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:67189400-67194800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr11:67189400-67194800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:67189400-67194800	Weak transcription	Placenta	Placenta
48	chr11:67189400-67195000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:67189400-67195200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr11:67189800-67192400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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