Variant report

Variant	rs3741398
Chromosome Location	chr11:64546106-64546107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:388)
CpG islands
(count:122)
Chromatin interactive
region (count:60)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:388 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr11:64546047-64546668	A549	lung:	n/a	n/a
2	POLR2A	chr11:64544725-64546892	H1-hESC	embryonic stem cell:	n/a	n/a
3	SP2	chr11:64545938-64546576	K562	blood:	n/a	chr11:64546272-64546287 chr11:64546317-64546327
4	POLR2A	chr11:64545731-64547026	GM12878	blood:	n/a	n/a
5	POLR2A	chr11:64545014-64546784	GM18526	blood:	n/a	n/a
6	MTA3	chr11:64545666-64547386	GM12878	blood:	n/a	n/a
7	YY1	chr11:64545043-64546751	HepG2	liver:	n/a	chr11:64546180-64546192 chr11:64546174-64546194 chr11:64546648-64546659 chr11:64546405-64546416
8	POLR2A	chr11:64545751-64546870	K562	blood:	n/a	n/a
9	FOXP2	chr11:64545762-64546700	PFSK-1	brain:	n/a	n/a
10	MYC	chr11:64546040-64546965	H1-hESC	embryonic stem cell:	n/a	chr11:64546611-64546620 chr11:64546607-64546616
11	YY1	chr11:64546018-64546381	K562	blood:	n/a	chr11:64546180-64546192 chr11:64546174-64546194
12	ZBTB33	chr11:64546074-64546678	K562	blood:	n/a	chr11:64546360-64546375
13	MAX	chr11:64544881-64546733	K562	blood:	n/a	chr11:64546611-64546620 chr11:64546607-64546616
14	POLR2A	chr11:64545779-64546703	HCT-116	colon:	n/a	n/a
15	RCOR1	chr11:64545787-64546934	Hela-S3	cervix:	n/a	n/a
16	CHD2	chr11:64545812-64546710	HepG2	liver:	n/a	chr11:64546633-64546643
17	SP4	chr11:64546100-64546689	H1-hESC	embryonic stem cell:	n/a	chr11:64546265-64546276 chr11:64546276-64546287
18	POLR2A	chr11:64545727-64546379	HepG2	liver:	n/a	n/a
19	PML	chr11:64545874-64546437	GM12878	blood:	n/a	n/a
20	POLR2A	chr11:64544967-64546747	IMR90	lung:	n/a	n/a
21	CREB1	chr11:64545705-64546874	GM12878	blood:	n/a	chr11:64546590-64546603
22	POLR2A	chr11:64544915-64546776	ProgFib	skin:	n/a	n/a
23	POLR2A	chr11:64546065-64546430	HepG2	liver:	n/a	n/a
24	TBL1XR1	chr11:64546066-64546843	GM12878	blood:	n/a	n/a
25	SP1	chr11:64545922-64546701	H1-hESC	embryonic stem cell:	n/a	chr11:64546278-64546287 chr11:64546407-64546416 chr11:64546265-64546276 chr11:64546641-64546653 chr11:64546406-64546420 chr11:64546308-64546329 chr11:64546642-64546651 chr11:64546276-64546287 chr11:64546641-64546653 chr11:64546643-64546652
26	BCL3	chr11:64546086-64546906	A549	lung:	n/a	chr11:64546501-64546510
27	E2F4	chr11:64545903-64546828	MCF10A-Er-Src	breast:	n/a	chr11:64546591-64546600 chr11:64546319-64546328 chr11:64546593-64546602 chr11:64546510-64546519
28	POLR2A	chr11:64545728-64546684	HepG2	liver:	n/a	n/a
29	SPI1	chr11:64546068-64546986	HL-60	blood:	n/a	chr11:64546699-64546708 chr11:64546698-64546711
30	ATF2	chr11:64546059-64546924	GM12878	blood:	n/a	chr11:64546589-64546603 chr11:64546591-64546602
31	ATF2	chr11:64546042-64546833	H1-hESC	embryonic stem cell:	n/a	chr11:64546589-64546603 chr11:64546591-64546602
32	YY1	chr11:64545743-64546723	SK-N-SH_RA	brain:	n/a	chr11:64546180-64546192 chr11:64546174-64546194 chr11:64546648-64546659 chr11:64546405-64546416
33	YY1	chr11:64545738-64546367	GM12891	blood:	n/a	chr11:64546180-64546192 chr11:64546174-64546194
34	POLR2A	chr11:64545007-64546980	GM12892	blood:	n/a	n/a
35	MAZ	chr11:64545016-64546838	K562	blood:	n/a	chr11:64546611-64546620 chr11:64546607-64546616
36	PBX3	chr11:64545842-64546884	SK-N-SH	brain:	n/a	chr11:64546318-64546327
37	POLR2A	chr11:64545657-64546763	GM12891	blood:	n/a	n/a
38	PAX5	chr11:64546065-64546699	GM12878	blood:	n/a	chr11:64546501-64546510
39	YY1	chr11:64545685-64546701	K562	blood:	n/a	chr11:64546180-64546192 chr11:64546174-64546194 chr11:64546648-64546659 chr11:64546405-64546416
40	RCOR1	chr11:64545822-64546660	HepG2	liver:	n/a	n/a
41	CHD1	chr11:64545446-64547278	GM12878	blood:	n/a	chr11:64546633-64546643
42	TAF1	chr11:64545645-64546814	A549	lung:	n/a	n/a
43	YY1	chr11:64546042-64546388	H1-hESC	embryonic stem cell:	n/a	chr11:64546180-64546192 chr11:64546174-64546194
44	FOXA1	chr11:64546074-64546514	T-47D	breast:	n/a	n/a
45	YY1	chr11:64545707-64546555	SK-N-SH_RA	brain:	n/a	chr11:64546180-64546192 chr11:64546174-64546194 chr11:64546405-64546416
46	MAX	chr11:64545781-64546719	H1-hESC	embryonic stem cell:	n/a	chr11:64546611-64546620 chr11:64546607-64546616
47	POLR2A	chr11:64545776-64546639	Gliobla	brain:	n/a	n/a
48	TAF7	chr11:64545593-64546516	H1-hESC	embryonic stem cell:	n/a	n/a
49	ZBTB7A	chr11:64545588-64546107	K562	blood:	n/a	n/a
50	POLR2A	chr11:64544955-64547164	GM19193	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64546100-64546150	HMEC	breast:	n/a
2	chr11:64546106-64546156	T-47D	breast:	n/a
3	chr11:64546100-64546150	GM12878	blood:	n/a
4	chr11:64546100-64546150	HepG2	liver:	n/a
5	chr11:64546100-64546150	Caco-2	colon:	n/a
6	chr11:64546100-64546150	GM12892	blood:	n/a
7	chr11:64546100-64546150	HCPEpiC	choroid plexus:	n/a
8	chr11:64546100-64546150	IMR90	lung:	fetal
9	chr11:64546106-64546156	K562	blood:	n/a
10	chr11:64546100-64546150	K562	blood:	n/a
11	chr11:64546100-64546150	SKMC	muscle:	n/a
12	chr11:64546106-64546156	HCPEpiC	choroid plexus:	n/a
13	chr11:64546100-64546150	Jurkat	blood:	n/a
14	chr11:64546106-64546156	AG04449	skin:	fetal
15	chr11:64546106-64546156	RPTEC	kidney:	n/a
16	chr11:64546100-64546150	AG10803	skin:	n/a
17	chr11:64546100-64546150	SAEC	small airway:	n/a
18	chr11:64546100-64546150	HAEpiC	amniotic membrane:	n/a
19	chr11:64546100-64546150	LNCaP	prostate:	n/a
20	chr11:64546100-64546150	HRPEpiC	eye:	n/a
21	chr11:64546106-64546156	CMK	blood:	n/a
22	chr11:64546100-64546150	HNPCEpiC	eye:	n/a
23	chr11:64546106-64546156	SK-N-SH	brain:	n/a
24	chr11:64546106-64546156	HMEC	breast:	n/a
25	chr11:64546106-64546156	HRCEpiC	kidney:	n/a
26	chr11:64546106-64546156	SAEC	small airway:	n/a
27	chr11:64546100-64546150	MCF-7	breast:	n/a
28	chr11:64546100-64546150	HRCEpiC	kidney:	n/a
29	chr11:64546106-64546156	HCT-116	colon:	n/a
30	chr11:64546106-64546156	NHBE	bronchial:	n/a
31	chr11:64546100-64546150	PANC-1	pancreas:	n/a
32	chr11:64546100-64546150	HCM	heart:	n/a
33	chr11:64546106-64546156	GM12892	blood:	n/a
34	chr11:64546100-64546150	ECC-1	luminal epithelium:	n/a
35	chr11:64546100-64546150	BJ	skin:	n/a
36	chr11:64546106-64546156	Hepatocyte	liver:	n/a
37	chr11:64546100-64546150	SK-N-MC	brain:	n/a
38	chr11:64546100-64546150	T-47D	breast:	n/a
39	chr11:64546100-64546150	HIPEpiC	eye:	n/a
40	chr11:64546106-64546156	AG09309	skin:	n/a
41	chr11:64546100-64546150	HCF	heart:	n/a
42	chr11:64546100-64546150	NT2-D1	testis:	n/a
43	chr11:64546106-64546156	HCM	heart:	n/a
44	chr11:64546100-64546150	GM06990	blood:	n/a
45	chr11:64546100-64546150	ProgFib	skin:	n/a
46	chr11:64546100-64546150	Hepatocyte	liver:	n/a
47	chr11:64546100-64546150	RPTEC	kidney:	n/a
48	chr11:64546106-64546156	NHDF-neo	bronchial:	n/a
49	chr11:64546106-64546156	HEEpiC	esophagus:	n/a
50	chr11:64546100-64546150	PrEC	prostate:	n/a

(count:60 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr11:64543661..64548104-chr11:64572931..64579605,12	MCF-7	breast:
2	chr11:64545644..64546319-chr17:8058969..8059925,2	Hela-S3	cervix:
3	chr11:64544768..64548246-chr11:64552203..64559348,13	K562	blood:
4	chr11:64544180..64546675-chr11:64850197..64851760,2	MCF-7	breast:
5	chr11:64544794..64547284-chr11:64888785..64891243,2	MCF-7	breast:
6	chr11:64544371..64546795-chr11:65624012..65625591,2	K562	blood:
7	chr11:64542437..64548103-chr11:64565883..64573066,9	K562	blood:
8	chr11:64544093..64548175-chr11:64656540..64660044,4	K562	blood:
9	chr11:64083115..64085565-chr11:64544305..64546685,2	K562	blood:
10	chr11:64544525..64547813-chr11:64683284..64685866,4	K562	blood:
11	chr11:64544849..64546983-chr11:64621402..64625371,3	K562	blood:
12	11:64544826-64559210..11:64658316-64660295	GM12878	blood:
13	chr11:64545307..64546190-chr19:36235841..36236593,2	Hela-S3	cervix:
14	chr11:64545114..64546892-chr11:65188018..65190269,2	K562	blood:
15	chr11:64544833..64546350-chr11:64643462..64646283,2	K562	blood:
16	chr11:64545186..64547005-chr11:64690556..64693336,2	K562	blood:
17	chr11:64544026..64547354-chr11:64610476..64614597,11	MCF-7	breast:
18	chr11:64544838..64547533-chr11:64621296..64624223,3	MCF-7	breast:
19	chr11:64543951..64548420-chr11:64681372..64686852,8	K562	blood:
20	chr11:64017295..64020181-chr11:64543928..64546600,2	MCF-7	breast:
21	chr11:64544278..64546281-chr11:64845334..64847627,2	MCF-7	breast:
22	chr11:64543744..64547403-chr11:64610118..64615032,5	K562	blood:
23	chr11:64545690..64546308-chr19:4400061..4400660,2	Hela-S3	cervix:
24	chr11:64543854..64548930-chr11:64577046..64580073,7	K562	blood:
25	chr11:64545204..64548174-chr11:64901244..64903002,2	MCF-7	breast:
26	chr11:64545651..64546368-chr19:56145800..56146778,2	HCT-116	colon:
27	chr11:64510354..64515027-chr11:64543156..64548358,11	K562	blood:
28	chr11:64543733..64546506-chr11:64646290..64648884,3	K562	blood:
29	chr11:64544644..64548990-chr11:64609868..64612302,3	K562	blood:
30	chr11:64544683..64548200-chr11:64565443..64572182,16	MCF-7	breast:
31	chr11:64543629..64546477-chr11:65627505..65629510,2	K562	blood:
32	chr11:64544159..64547610-chr11:64575495..64579776,5	K562	blood:
33	chr11:64543505..64547238-chr11:64690556..64694712,4	K562	blood:
34	chr11:64543298..64549423-chr11:64566945..64572163,10	K562	blood:
35	chr11:64544574..64547411-chr11:64891542..64893399,2	MCF-7	breast:
36	chr11:64544278..64548048-chr11:64882517..64885401,5	K562	blood:
37	chr11:64543433..64548261-chr11:64608025..64614805,12	MCF-7	breast:
38	chr11:64545702..64546217-chr7:112090322..112091021,2	HCT-116	colon:
39	chr11:64544185..64546327-chr11:64562528..64564348,2	K562	blood:
40	chr11:64543824..64546166-chr11:66233104..66235592,3	MCF-7	breast:
41	chr11:64546052..64548172-chr11:64880141..64881711,2	MCF-7	breast:
42	chr11:64545086..64548013-chr11:64793511..64795283,2	K562	blood:
43	chr11:64008164..64010074-chr11:64544584..64546736,2	MCF-7	breast:
44	chr11:64545248..64547245-chr11:64807000..64808581,2	MCF-7	breast:
45	chr11:64544093..64547951-chr11:64656650..64658815,3	K562	blood:
46	chr11:64544538..64546780-chr11:64879402..64882290,2	MCF-7	breast:
47	chr11:64545301..64547974-chr11:64645436..64647559,2	MCF-7	breast:
48	chr1:109642638..109643482-chr11:64545224..64546308,3	Hela-S3	cervix:
49	chr11:64490193..64492198-chr11:64544563..64546459,2	MCF-7	breast:
50	chr11:64544868..64546634-chr11:64879312..64880839,2	K562	blood:

No data

Variant related genes	Relation type
SF1	TF binding region
ENSG00000269038	TF binding region
SF1	CpG island
ENSG00000269038	CpG island
ENSG00000262429	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000110076	Chromatin interaction
ENSG00000207648	Chromatin interaction
ENSG00000110046	Chromatin interaction
ENSG00000131931	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000179094	Chromatin interaction
ENSG00000130590	Chromatin interaction
ENSG00000173486	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000269290	Chromatin interaction
ENSG00000143878	Chromatin interaction
ENSG00000161265	Chromatin interaction
ENSG00000133895	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000091640	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000162300	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000168061	Chromatin interaction
ENSG00000101161	Chromatin interaction
ENSG00000188223	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000267120	Chromatin interaction
ENSG00000205155	Chromatin interaction
ENSG00000149782	Chromatin interaction
ENSG00000006652	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000267804	Chromatin interaction
ENSG00000171219	Chromatin interaction
ENSG00000068366	Chromatin interaction
ENSG00000203400	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000162298	Chromatin interaction
ENSG00000213015	Chromatin interaction
ENSG00000126432	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000168067	Chromatin interaction
ENSG00000270066	Chromatin interaction
ENSG00000146670	Chromatin interaction
ENSG00000173113	Chromatin interaction
ENSG00000229719	Chromatin interaction
ENSG00000141985	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10897524	1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10897525	0.94[MEX][hapmap]
rs11231853	0.86[CEU][hapmap]
rs11231859	1.00[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs11231869	0.90[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.94[MEX][hapmap];0.96[ASN][1000 genomes]
rs1143937	1.00[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap]
rs12223914	0.83[AMR][1000 genomes]
rs1633462	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17146121	0.89[CEU][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap]
rs2003293	0.89[EUR][1000 genomes]
rs2073798	0.86[GIH][hapmap];0.83[MEX][hapmap]
rs2230414	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2267918	1.00[CEU][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs2284301	1.00[CEU][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2375335	0.84[EUR][1000 genomes]
rs2959652	1.00[CEU][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs3809076	0.89[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs474707	0.81[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs476037	0.89[CEU][hapmap];0.94[MEX][hapmap]
rs477549	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs483962	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs487105	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs489192	1.00[CEU][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]
rs490980	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs494128	0.82[EUR][1000 genomes]
rs496914	1.00[CEU][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs523200	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs523752	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs532747	0.85[CHB][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes]
rs547066	0.84[CHB][hapmap];0.85[GIH][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes]
rs569602	0.94[MEX][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes]
rs580374	0.87[EUR][1000 genomes]
rs58483071	0.89[EUR][1000 genomes]
rs589691	1.00[CEU][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs593394	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs606458	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs607389	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs620006	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs624975	0.90[CEU][hapmap];0.82[GIH][hapmap];0.94[MEX][hapmap]
rs625172	0.86[GIH][hapmap];0.83[MEX][hapmap]
rs633923	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs637332	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs667237	0.86[EUR][1000 genomes]
rs669976	0.90[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap]
rs674297	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs677298	1.00[CEU][hapmap];0.80[CHB][hapmap];0.88[MEX][hapmap]
rs680273	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs683841	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs684720	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs686171	0.80[AMR][1000 genomes]
rs693235	0.90[CEU][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs72643567	0.82[EUR][1000 genomes]
rs72643568	0.82[EUR][1000 genomes]
rs7939965	0.89[CEU][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897694	chr11:64334114-64584959	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv818842	chr11:64345448-64546391	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
4	nsv555196	chr11:64357072-64559898	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
6	nsv555198	chr11:64373899-64573589	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv897697	chr11:64447420-64584959	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
8	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
10	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
11	nsv555202	chr11:64477050-64573589	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
12	nsv468597	chr11:64477050-64584959	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv468598	chr11:64477050-64584959	Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv555203	chr11:64477050-64584959	Strong transcription Genic enhancers Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv1049744	chr11:64486615-64630149	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
16	nsv832189	chr11:64487183-64620199	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
17	nsv469962	chr11:64527080-64621573	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
18	nsv897702	chr11:64532579-64584231	Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv825947	chr11:64538092-64550927	Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
20	nsv897703	chr11:64538346-64574200	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
21	nsv825948	chr11:64541003-64550185	Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
22	esv3323089	chr11:64543376-64547574	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
23	esv3341708	chr11:64544401-64546949	Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
24	esv3331228	chr11:64544551-64546874	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs3741398	PYGM	cis	parietal	SCAN
rs3741398	PYGM	cis	cerebellum	SCAN
rs3741398	SF1	cis	lymphoblastoid	seeQTL
rs3741398	MALAT1	cis	parietal	SCAN
rs3741398	ANKRD13D	cis	parietal	SCAN
rs3741398	TMEM138	cis	parietal	SCAN
rs3741398	SF1	cis	multi-tissue	Pritchard
rs3741398	POLA2	cis	cerebellum	SCAN
rs3741398	EHD1	cis	cerebellum	SCAN
rs3741398	SF1	Cis_1M	lymphoblastoid	RTeQTL
rs3741398	LRRN4CL	cis	cerebellum	SCAN
rs3741398	CABP2	cis	parietal	SCAN
rs3741398	B3GNT1	cis	cerebellum	SCAN
rs3741398	TMEM138	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64544200-64546200	Active TSS	Ovary	ovary
2	chr11:64544200-64547000	Active TSS	Aorta	Aorta
3	chr11:64544400-64547200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr11:64544400-64547200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:64544400-64547200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr11:64544400-64547200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:64544600-64546400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:64544600-64546400	Active TSS	Lung	lung
9	chr11:64544600-64546800	Active TSS	HSMM	muscle
10	chr11:64544600-64546800	Active TSS	NHLF	lung
11	chr11:64544600-64547000	Active TSS	Pancreas	Pancrea
12	chr11:64544600-64547200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:64544600-64547200	Active TSS	Esophagus	oesophagus
14	chr11:64544600-64547200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr11:64544600-64547200	Active TSS	Right Ventricle	heart
16	chr11:64544800-64546800	Active TSS	NH-A	brain
17	chr11:64544800-64547000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:64544800-64547000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:64544800-64547000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:64544800-64547000	Active TSS	Fetal Intestine Small	intestine
21	chr11:64544800-64547000	Active TSS	Left Ventricle	heart
22	chr11:64544800-64547000	Active TSS	Placenta Amnion	Placenta Amnion
23	chr11:64544800-64547000	Active TSS	HSMMtube	muscle
24	chr11:64544800-64547000	Active TSS	NHDF-Ad	bronchial
25	chr11:64544800-64547200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:64544800-64547200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:64544800-64547200	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr11:64544800-64547200	Active TSS	Fetal Brain Female	brain
29	chr11:64544800-64547200	Active TSS	Fetal Kidney	kidney
30	chr11:64544800-64547200	Active TSS	Psoas Muscle	Psoas
31	chr11:64544800-64547200	Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr11:64544800-64547200	Active TSS	Small Intestine	intestine
33	chr11:64544800-64547200	Active TSS	Stomach Mucosa	stomach
34	chr11:64544800-64547400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:64544800-64547400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:64544800-64547400	Active TSS	Brain Anterior Caudate	brain
37	chr11:64544800-64547400	Active TSS	Stomach Smooth Muscle	stomach
38	chr11:64545000-64546600	Active TSS	Spleen	Spleen
39	chr11:64545000-64546800	Active TSS	Primary monocytes fromperipheralblood	blood
40	chr11:64545000-64546800	Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr11:64545000-64546800	Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr11:64545000-64546800	Active TSS	Brain Angular Gyrus	brain
43	chr11:64545000-64546800	Active TSS	Brain Hippocampus Middle	brain
44	chr11:64545000-64546800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr11:64545000-64546800	Active TSS	HUVEC	blood vessel
46	chr11:64545000-64546800	Active TSS	Monocytes-CD14+_RO01746	blood
47	chr11:64545000-64547000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:64545000-64547000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:64545000-64547000	Active TSS	Brain Cingulate Gyrus	brain
50	chr11:64545000-64547000	Active TSS	Brain Germinal Matrix	brain

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