Variant report
| Variant | rs374144 |
|---|---|
| Chromosome Location | chr12:45307633-45307634 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10506258 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs10785535 | 1.00[JPT][hapmap] |
| rs10785538 | 0.80[ASN][1000 genomes] |
| rs10785539 | 0.88[JPT][hapmap] |
| rs10880695 | 0.87[JPT][hapmap] |
| rs10880696 | 0.91[JPT][hapmap] |
| rs10880704 | 0.84[ASN][1000 genomes] |
| rs11182706 | 0.91[JPT][hapmap] |
| rs12822444 | 0.87[JPT][hapmap] |
| rs1376126 | 0.82[CHB][hapmap];0.91[JPT][hapmap] |
| rs1506676 | 0.87[JPT][hapmap] |
| rs1506678 | 0.91[JPT][hapmap] |
| rs1506679 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1506680 | 0.90[ASN][1000 genomes] |
| rs1876241 | 0.86[ASN][1000 genomes] |
| rs2408084 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs2408085 | 0.81[CHB][hapmap] |
| rs2465108 | 0.94[ASN][1000 genomes] |
| rs2465110 | 0.87[ASN][1000 genomes] |
| rs2658948 | 0.88[ASN][1000 genomes] |
| rs2658954 | 0.85[ASN][1000 genomes] |
| rs2939697 | 0.88[ASN][1000 genomes] |
| rs2939698 | 0.89[ASN][1000 genomes] |
| rs7295923 | 0.91[JPT][hapmap] |
| rs7952764 | 0.88[JPT][hapmap] |
| rs7963606 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899049 | chr12:45299202-45376053 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899050 | chr12:45299202-45400614 | Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv899051 | chr12:45307633-45376053 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
