Variant report

Variant	rs374156039
Chromosome Location	chr1:84610128-84610129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546689	chr1:84531117-84670816	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv546690	chr1:84562265-84655238	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv871731	chr1:84597396-84658591	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv871656	chr1:84601048-84693671	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv997601	chr1:84609346-84672859	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1005225	chr1:84609871-84667950	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84588000-84618400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:84607000-84613600	Weak transcription	Brain Angular Gyrus	brain
3	chr1:84609000-84610800	Weak transcription	Gastric	stomach
4	chr1:84609400-84610200	Flanking Active TSS	Dnd41	blood
5	chr1:84609400-84610400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr1:84609400-84610400	Enhancers	Fetal Kidney	kidney
7	chr1:84609400-84612800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:84609400-84612800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:84609600-84610200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:84609600-84610200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:84609600-84610200	Enhancers	HSMM	muscle
12	chr1:84609600-84610600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:84609600-84611000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:84609600-84611400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:84609600-84612600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:84609600-84612600	Enhancers	NHDF-Ad	bronchial
17	chr1:84609600-84612600	Enhancers	NHEK	skin
18	chr1:84609600-84612600	Enhancers	Osteobl	bone
19	chr1:84609600-84612800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:84609600-84613000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr1:84609600-84613800	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr1:84609600-84614000	Active TSS	Primary T cells fromperipheralblood	blood
23	chr1:84609800-84610200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr1:84609800-84610200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr1:84609800-84610200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr1:84609800-84610200	Enhancers	Brain Hippocampus Middle	brain
27	chr1:84609800-84610200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr1:84609800-84610200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:84609800-84610200	Enhancers	Fetal Heart	heart
30	chr1:84609800-84610400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:84609800-84610400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:84609800-84610400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
33	chr1:84609800-84610400	Enhancers	Brain Substantia Nigra	brain
34	chr1:84609800-84610400	Enhancers	A549	lung
35	chr1:84609800-84611200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr1:84609800-84611200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:84609800-84611200	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr1:84609800-84611200	Enhancers	HMEC	breast
39	chr1:84609800-84611400	Active TSS	Primary B cells from peripheral blood	blood
40	chr1:84609800-84611400	Active TSS	Adipose Nuclei	Adipose
41	chr1:84609800-84611600	Active TSS	HUVEC	blood vessel
42	chr1:84609800-84612400	Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr1:84609800-84612400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr1:84609800-84612400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr1:84609800-84612400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:84609800-84612800	Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr1:84609800-84612800	Active TSS	Fetal Thymus	thymus
48	chr1:84609800-84612800	Active TSS	Thymus	Thymus
49	chr1:84609800-84612800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr1:84609800-84613000	Enhancers	Primary neutrophils fromperipheralblood	blood

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