Variant report

Variant	rs3741645
Chromosome Location	chr12:68052817-68052818
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:68049489..68051267-chr12:68051638..68054275,2	K562	blood:
2	chr12:68044932..68051351-chr12:68051547..68056167,7	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFNG-3	chr12:68052771-68053364	ENSG00000235872.2

Variant related genes	Relation type
ENSG00000127334	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430007	chr12:67947726-68241938	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68045800-68053000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr12:68045800-68058000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:68046200-68053800	Strong transcription	K562	blood
4	chr12:68046400-68053200	Genic enhancers	Primary T cells fromperipheralblood	blood
5	chr12:68046800-68053000	Genic enhancers	Fetal Muscle Leg	muscle
6	chr12:68046800-68053200	Strong transcription	HSMM	muscle
7	chr12:68046800-68055600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:68047200-68057600	Strong transcription	Primary B cells from cord blood	blood
9	chr12:68047200-68058000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
10	chr12:68047400-68054200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:68047600-68053400	Strong transcription	Thymus	Thymus
12	chr12:68047600-68054600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr12:68048000-68058800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
14	chr12:68048400-68053000	Strong transcription	Fetal Stomach	stomach
15	chr12:68048400-68053000	Strong transcription	NHEK	skin
16	chr12:68048600-68055000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr12:68048800-68055000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr12:68048800-68055000	Weak transcription	Right Atrium	heart
19	chr12:68048800-68058000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:68048800-68058600	Strong transcription	Fetal Thymus	thymus
21	chr12:68049000-68053400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr12:68049200-68053600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr12:68049200-68053600	Strong transcription	Fetal Brain Female	brain
24	chr12:68049400-68053400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr12:68049400-68053600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr12:68049600-68053800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:68049800-68053600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr12:68049800-68053600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr12:68049800-68053800	Strong transcription	Fetal Intestine Large	intestine
30	chr12:68049800-68053800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr12:68050000-68053000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr12:68050000-68053600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr12:68050000-68053600	Strong transcription	A549	lung
34	chr12:68050000-68054600	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr12:68050200-68053000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr12:68050200-68053200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr12:68050200-68053400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr12:68050200-68053400	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr12:68050200-68053600	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr12:68050200-68053600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr12:68050200-68053800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr12:68050200-68054000	Strong transcription	Placenta	Placenta
43	chr12:68050200-68054400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr12:68050400-68053400	Strong transcription	Brain Germinal Matrix	brain
45	chr12:68050600-68053000	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr12:68050600-68053000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr12:68050600-68053000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr12:68050600-68053200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr12:68050600-68053600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr12:68050600-68053600	Strong transcription	Liver	Liver

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