Variant report

Variant	rs3742209
Chromosome Location	chr13:110638360-110638361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1889775	0.88[EUR][1000 genomes]
rs61239565	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7320126	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7337066	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7998434	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110636800-110641600	Weak transcription	HMEC	breast
2	chr13:110637400-110638400	Weak transcription	A549	lung
3	chr13:110638000-110638600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:110638000-110639000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:110638200-110638600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:110638200-110638600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr13:110638200-110638800	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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