Variant report

Variant	rs37425
Chromosome Location	chr5:50135321-50135322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:50134167..50137046-chr5:50144951..50147438,2	MCF-7	breast:
2	chr5:50134929..50136632-chr5:50136986..50139711,2	MCF-7	breast:
3	chr5:50130261..50133106-chr5:50134212..50135908,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs26070	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462159	chr5:49960673-50229851	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv598108	chr5:49960673-50229851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1034445	chr5:49986171-50492609	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv598116	chr5:50064292-50318550	Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:50071600-50138200	Weak transcription	Placenta	Placenta
2	chr5:50078200-50140000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:50085400-50136200	Weak transcription	Thymus	Thymus
4	chr5:50091200-50136000	Weak transcription	Gastric	stomach
5	chr5:50091200-50140600	Weak transcription	Small Intestine	intestine
6	chr5:50100200-50139400	Weak transcription	Ovary	ovary
7	chr5:50104600-50136200	Weak transcription	NHEK	skin
8	chr5:50108200-50142800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:50109400-50141800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:50109800-50136400	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:50110000-50141800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr5:50110400-50143400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:50110400-50143600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:50110800-50140200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr5:50111000-50140800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:50111200-50141600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr5:50113000-50139800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:50115000-50138000	Weak transcription	Fetal Stomach	stomach
19	chr5:50118600-50139600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:50119200-50139800	Weak transcription	Spleen	Spleen
21	chr5:50119200-50144200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr5:50123800-50137600	Strong transcription	Primary T cells from cord blood	blood
23	chr5:50124200-50145200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:50124400-50141400	Weak transcription	Fetal Intestine Large	intestine
25	chr5:50124400-50141600	Weak transcription	Colon Smooth Muscle	Colon
26	chr5:50125000-50140000	Weak transcription	Fetal Lung	lung
27	chr5:50125000-50140600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:50125200-50139800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr5:50125200-50142800	Weak transcription	HMEC	breast
30	chr5:50125200-50143200	Weak transcription	Left Ventricle	heart
31	chr5:50125400-50149200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr5:50125800-50137600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:50125800-50137800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr5:50125800-50138200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr5:50125800-50143200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr5:50126400-50143200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:50129200-50148400	Weak transcription	GM12878-XiMat	blood
38	chr5:50130000-50135800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr5:50130600-50141400	Strong transcription	Dnd41	blood
40	chr5:50130800-50138000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:50130800-50141400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr5:50131200-50136200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr5:50131200-50139000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr5:50131600-50138200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:50131600-50138200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr5:50131800-50136200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr5:50132200-50137800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr5:50132200-50138200	Weak transcription	Liver	Liver
49	chr5:50132600-50138200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr5:50132600-50141200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links