Variant report

Variant	rs374258127
Chromosome Location	chrX:65948713-65948714
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:65330062..65330591-chrX:65948300..65949050,3	MCF-7	breast:
2	chrX:65420456..65421112-chrX:65948321..65948834,2	MCF-7	breast:
3	chrX:65421200..65421901-chrX:65948234..65949098,4	MCF-7	breast:
4	chrX:65420975..65421894-chrX:65948233..65949029,2	MCF-7	breast:
5	chrX:65628289..65628799-chrX:65948303..65948910,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	nsv916917	chrX:65628203-65966658	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv498092	chrX:65628203-66170369	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv949354	chrX:65705774-65952293	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv432334	chrX:65705774-66018207	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv520630	chrX:65706079-66017027	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv529910	chrX:65738026-66025016	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv532865	chrX:65768210-65952059	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv6935	chrX:65943016-65987709	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	nsv829371	chrX:65945216-65954615	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65948400-65949200	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chrX:65948400-65949200	Active TSS	Primary T cells fromperipheralblood	blood
3	chrX:65948400-65949200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chrX:65948400-65949400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chrX:65948600-65948800	Active TSS	Adipose Nuclei	Adipose
6	chrX:65948600-65948800	Flanking Active TSS	Liver	Liver
7	chrX:65948600-65948800	Active TSS	Ovary	ovary
8	chrX:65948600-65948800	Active TSS	Pancreas	Pancrea
9	chrX:65948600-65949000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chrX:65948600-65949000	Active TSS	Primary neutrophils fromperipheralblood	blood
11	chrX:65948600-65949000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chrX:65948600-65949000	Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chrX:65948600-65949000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chrX:65948600-65949000	Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chrX:65948600-65949000	Active TSS	Cortex derived primary cultured neurospheres	brain
16	chrX:65948600-65949000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chrX:65948600-65949000	Active TSS	Brain Anterior Caudate	brain
18	chrX:65948600-65949000	Active TSS	Brain Germinal Matrix	brain
19	chrX:65948600-65949000	Active TSS	Colonic Mucosa	Colon
20	chrX:65948600-65949000	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chrX:65948600-65949000	Active TSS	Left Ventricle	heart
22	chrX:65948600-65949000	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chrX:65948600-65949000	Active TSS	Stomach Mucosa	stomach
24	chrX:65948600-65949000	Active TSS	GM12878-XiMat	blood
25	chrX:65948600-65949200	Active TSS	H1 Cell Line	embryonic stem cell
26	chrX:65948600-65949200	Active TSS	H9 Cell Line	embryonic stem cell
27	chrX:65948600-65949200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chrX:65948600-65949200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chrX:65948600-65949200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chrX:65948600-65949200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chrX:65948600-65949200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chrX:65948600-65949200	Active TSS	HUES6 Cell Line	embryonic stem cell
33	chrX:65948600-65949200	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chrX:65948600-65949200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chrX:65948600-65949200	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chrX:65948600-65949200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chrX:65948600-65949200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chrX:65948600-65949200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chrX:65948600-65949200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chrX:65948600-65949200	Active TSS	Primary B cells from cord blood	blood
41	chrX:65948600-65949200	Active TSS	Primary T cells from cord blood	blood
42	chrX:65948600-65949200	Active TSS	Primary hematopoietic stem cells	blood
43	chrX:65948600-65949200	Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chrX:65948600-65949200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chrX:65948600-65949200	Active TSS	Primary T helper cells PMA-I stimulated	--
46	chrX:65948600-65949200	Active TSS	Primary T helper cells fromperipheralblood	blood
47	chrX:65948600-65949200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chrX:65948600-65949200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chrX:65948600-65949200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chrX:65948600-65949200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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