Variant report

Variant	rs374271610
Chromosome Location	chr5:89940254-89940255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:89823962..89827222-chr5:89937926..89943647,5	K562	blood:
2	chr5:89938091..89940489-chr5:89979242..89981079,3	K562	blood:
3	chr5:89703474..89706063-chr5:89939193..89940877,3	K562	blood:
4	chr5:89703250..89710229-chr5:89936398..89944611,13	K562	blood:
5	chr5:89823998..89826895-chr5:89936976..89941414,5	K562	blood:
6	chr5:89731732..89734444-chr5:89940233..89942146,2	K562	blood:
7	chr5:89938077..89942103-chr5:90675427..90679817,6	K562	blood:
8	chr5:89938651..89940282-chr5:89943212..89946172,3	MCF-7	breast:
9	chr5:89938681..89942307-chr5:90675773..90680271,6	K562	blood:
10	chr5:89842756..89845213-chr5:89939588..89942557,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164199	Chromatin interaction
ENSG00000153140	Chromatin interaction
ENSG00000113369	Chromatin interaction
ENSG00000176018	Chromatin interaction
ENSG00000255647	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv933668	chr5:89854253-89999672	Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv531965	chr5:89886550-90145002	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv933161	chr5:89939500-89954066	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89918000-89950600	Weak transcription	Pancreas	Pancrea
2	chr5:89928800-89941000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:89929000-89940400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:89929000-89948600	Weak transcription	Brain Anterior Caudate	brain
5	chr5:89935800-89941400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:89936600-89940800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:89936600-89940800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:89936600-89949000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:89936600-89951000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:89936800-89940800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:89936800-89941200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:89936800-89948600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:89936800-89951000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:89936800-89994200	Weak transcription	Brain Germinal Matrix	brain
15	chr5:89937000-89940400	Active TSS	K562	blood
16	chr5:89937000-89948600	Weak transcription	Fetal Brain Female	brain
17	chr5:89937200-89943000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:89937800-89941000	Weak transcription	HSMM	muscle
19	chr5:89938200-89940400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:89938400-89941400	Enhancers	Primary hematopoietic stem cells	blood
21	chr5:89938600-89941400	ZNF genes & repeats	GM12878-XiMat	blood
22	chr5:89939600-89941400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr5:89939600-89941600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:89939800-89941200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr5:89939800-89941400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:89939800-89943000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:89940000-89940400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:89940000-89940400	Enhancers	Fetal Heart	heart
29	chr5:89940000-89941000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr5:89940000-89941200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr5:89940000-89941400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:89940000-89941400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr5:89940000-89941600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr5:89940200-89941400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
35	chr5:89940200-89942400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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